Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

ncbi / BAMscale Public

Notifications You must be signed in to change notification settings
Fork 17
Star 67

Code
Issues 1
Pull requests 1
Actions
Projects
Wiki
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Wiki
Security
Insights

Manuals

Jump to bottom

pongorlorinc edited this page Aug 21, 2019 · 1 revision

Insert manual links here

Toggle table of contents Pages 18

Home
Benchmarking
Brief Examples
Detailed usage: RNA seq coverage tracks
Detailed Use: Generating Scaled Coverage Tracks
Detailed Use: OKseq RFD (Replication Fork Directionality) Track Generation
Detailed Use: Processing END seq Data
Detailed Use: Quantifying Peak Coverages from Multiple BAM Files
Detailed Use: Replication Timing log2 Coverage Ratio from Two BAM Files
Detailed Use: Smooth Coverage Tracks
Finding OK seq strand switched from the RFD track
Installation
Main_Sidebar
Manuals
Pairwise comparison of peaks [interactive plotting using R]
Peak Quantifying
Replication timing BED segments from bigwig
Scaling BAM Files from DNAseq Data

Main page
Home
Installation
Benchmarking
Brief examples
- Quantifying peaks
- Creating bigWig(s)
Detailed Manuals
Visualization scripts

Clone this wiki locally

Footer

© 2025 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.