Takes Job Params (as JSON) and runs PATRIC Mauve.
- node (8.9.1+)
- npm (5.6.0+)
cd p3_mauve
npm install
Usage: p3-mauve [options]
Options:
--jfile [value] Pass job params (json) as file
--sstring [value] Server config (json) as string
-o, --output [value] Where to save files/results
Example:
p3-mauve \
--jfile jobdesc.json \
--sstring '{"data_api":"<end_point>"}' \
-o test-data/
where jsfile.json has format:
{
"genome_ids": ["204722.5", "224914.11", "262698.4"],
"output_path": "/[email protected]/test/",
"output_file": "test-mauve"
}- Fork it!
- Create your feature branch:
git checkout -b my-new-feature - Commit your changes:
git commit -m 'Add some feature' - Push to the branch:
git push origin my-new-feature - Submit a pull request