Boss-Annotator

Software for Downloading and Uploading to the Boss.

Installation:

Setup

1. Clone this repository
2. pip3 install -r requirements.txt
3. Add your Token to neurodata.cfg.example, and rename it to neurodata.cfg

Pulling Images

1. In the main directory containing run.py, run: python3 run.py
2. Open http://localhost:4000, fill out the forms for pulling and click the button.
3. If successful, you will see a success message. If not, information about what went wrong will appear.
4. The tif stack you pulled will be located in the DATA/ directory

Annotating (exactly the same as in V1 Documentation)

1. Open FIJI
2. Annotate the image, taking the steps given in the link above.
3. Save the image with any name into the same DATA/ directory.

Pushing Annotations

1. In the main directory containing run.py, run: python3 run.py
2. Open http://localhost:4000, fill out the forms for pushing and click the button.
3. If successful, you will see a success message. If not, information about what went wrong will appear.

Documentation:

V1 Documentation)