Add sys deps from Dockerfile in r func (with &&)

neurogenomics · Nov 17, 2023 · 4ca6ac5 · 4ca6ac5
1 parent 8cd076a
commit 4ca6ac5
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/inst/templates/Dockerfile b/inst/templates/Dockerfile
@@ -8,7 +8,7 @@ FROM {BASE_IMAGE}
 RUN Rscript -e 'if(!require("remotes")) install.packages("remotes"); \ 
                 if(!require("rworkflows")) remotes::install_github("neurogenomics/rworkflows@dev");'
 #### --Step 3--: Install system dependencies ####
-RUN sysreqs=$(Rscript -e 'rworkflows::dependencies_linux(package="rworkflows")') \ 
+RUN sysreqs=$(Rscript -e 'rworkflows::dependencies_linux(package="rworkflows")') && \ 
     sudo -s eval "$sysreqs"
 #### --Step 2--: Create a buildzone folder ####
 # BiocCheck requires the buildzone to have the same name as the R package
@@ -17,7 +17,7 @@ RUN echo $PKG
 RUN mkdir -p /$PKG
 ADD . /$PKG
 WORKDIR /$PKG
-#### --Step 5--:Install package dependencies ####
+#### --Step 5--: Install package dependencies ####
 RUN Rscript -e 'options(crayon.enabled=TRUE, timeout={TIMEOUT}); \ 
                 if(!require("BiocManager",quietly=TRUE)) install.packages("BiocManager"); \ 
                 repos <- BiocManager::repositories(); \