Document other meta-analysis tools outside our ecosystem (#654)

* Document other meta-analysis tools outside our ecosystem.

* Update minimum pymare version.

* Whoops.

docs/about.rst

@@ -42,3 +42,31 @@ Currently, those methods are spread out across a range of programming languages
 or are never even translated from the original papers into useable tools.
 NiMARE operates on NIMADS-format datasets, which users will be able to compile by searching the NeuroStore database with the pyNIMADS library.
 A number of other services in the ecosystem will then use NiMARE functions to perform meta-analyses, including Neurosynth 2.0 and `NeuroVault`_.
+
+Other Meta-Analytic Tools
+-------------------------
+
+Outside of the shared ecosystem detailed above, there are a number of tools.
+
+Coordinate-based meta-analysis tools
+````````````````````````````````````
+
+`BrainMap`_: The `BrainMap`_ suite includes applications for the `ALE`_ CBMA algorithm (via the `GingerALE`_ app) and
+interacting with the BrainMap database (via the `Sleuth`_ and `Scribe`_ apps).
+
+The `MKDA Toolbox`_: This toolbox implements the MKDA algorithm, as well as a range derivative analyses.
+
+The `SDM`_ Toolbox: This toolbox contains the hybrid coordinate/image-based seed-based d-mapping algorithm.
+
+`NeuRoi Toolbox`_: This toolbox contains an implementation of the `Analysis of Brain Coordinates`_ (ABC) CBMA algorithm.
+
+Image-based meta-analysis tools
+```````````````````````````````
+
+`IBMA SPM extension`_: This SPM extension implements a number of image-based meta-analysis algorithms.
+
+Meta-analysis tools for other neuroimaging modalities
+`````````````````````````````````````````````````````
+
+`ERPscanr`_: A resource for semi-automated, large-scale meta-analyses of ERP data.
+

docs/links.rst

@@ -4,6 +4,8 @@
 
 .. _Anaconda: https://www.anaconda.com/download/#macos
 
+.. _Analysis of Brain Coordinates: https://www.biorxiv.org/content/10.1101/2020.12.03.409953v1
+
 .. _BrainMap: http://www.brainmap.org
 
 .. _BrainSpell: http://brainspell.org/
@@ -14,14 +16,22 @@
 
 .. _command line interface: cli.html
 
+.. _ERPscanr: https://erpscanr.github.io/ERPscanr/
+
 .. _flake8: https://flake8.pycqa.org/en/latest/
 
 .. _FSL: https://fsl.fmrib.ox.ac.uk
 
 .. _GingerALE: https://www.brainmap.org/ale/
 
+.. _IBMA SPM extension: https://github.com/NeuroimagingMetaAnalysis/ibma
+
 .. _metaCurious: https://github.com/neurostuff/metaCurious
 
+.. _MKDA Toolbox: https://github.com/canlab/Canlab_MKDA_MetaAnalysis
+
+.. _NeuRoi Toolbox: https://www.nottingham.ac.uk/research/groups/clinicalneurology/neuroi.aspx
+
 .. _NeuroPower: http://neuropowertools.org
 
 .. _NeuroQuery: https://neuroquery.org
@@ -62,6 +72,10 @@
 
 .. _scikit-learn: https://scikit-learn.org/stable/developers/index.html
 
+.. _Scribe: https://brainmap.org/scribe/
+
+.. _SDM: https://www.sdmproject.com
+
 .. _Sleuth: http://www.brainmap.org/software.html#Sleuth
 
 .. _SPM: https://www.fil.ion.ucl.ac.uk/spm/

setup.cfg

@@ -47,7 +47,7 @@ install_requires =
     nilearn>=0.7.1
     numpy
     pandas
-    pymare>=0.0.2
+    pymare>=0.0.3rc2
     requests
     scikit-learn
     scipy
@@ -91,7 +91,7 @@ minimum =
     nilearn==0.7.1
     numpy==1.18
     pandas==1.1
-    pymare==0.0.2
+    pymare==0.0.3rc2
     scikit-learn==0.22
     scipy==1.5  # 1.6 drops Python 3.6 support
 all =