Include GA4GH support into the standalone binary (make pack) (#1666)

Signed-off-by: Kirill Tsukanov <[email protected]>
nextflow-io · Aug 1, 2020 · e2175d4 · e2175d4
1 parent b9b57f8
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diff --git a/Makefile b/Makefile
@@ -93,6 +93,12 @@ upload:
 pack:
 	BUILD_PACK=1 ./gradlew packAll
 
+#
+# Create self-contained distribution package, including GA4GH support and associated dependencies
+#
+packGA4GH:
+	BUILD_PACK=1 ./gradlew -PGA4GH packAll
+
 #
 # Upload NF launcher to nextflow.io web site
 #

diff --git a/README.md b/README.md
@@ -214,6 +214,8 @@ The self-contained runnable Nextflow packages can be created by using the follow
 make pack
 ```
 
+To include support of GA4GH and its dependencies in the binary, use `make packGA4GH` instead.
+
 In order to install the compiled packages use the following command:
 
 ```bash

diff --git a/packing.gradle b/packing.gradle
@@ -209,6 +209,12 @@ task packAll(type: Jar) {
     manifest.attributes('Main-Class': 'CapsuleLoader', 'google')
     manifest.attributes('Main-Class': 'CapsuleLoader', 'ignite')
 
+    if( project.hasProperty('GA4GH') ) {
+        println "The build will include GA4GH dependencies."
+        from(configurations.ga4gh)
+        manifest.attributes('Main-Class': 'CapsuleLoader', 'ga4gh')
+    }
+
     doLast {
         file(releaseDir).mkdir()
         // cleanup
-Original file line number
+Diff line change
@@ Expand Up @@
     make pack
     ```
+    To include support of GA4GH and its dependencies in the binary, use `make packGA4GH` instead.
     In order to install the compiled packages use the following command:
     ```bash
@@ Expand Down @@