Merge branch 'master' of github.com:nextflow-io/nextflow

README.md

@@ -200,7 +200,7 @@ When complete, execute the program by using the `run.sh` launch script in the pr
 Required dependencies
 ---------------------
 
-Oracle Java 7 (Java 8 will be supported as soon as Groovy 2.3 will be released).
+Java 7 or higher
 
 
 Documentation

cloud-boot.sh

@@ -0,0 +1,40 @@
+#!/usr/bin/env bash
+set -e
+set -x 
+
+#
+# verify Amazon auth codes are availables
+#
+[[ -z 'AWS_ACCESS_KEY' ]] && { echo 'Missing $AWS_ACCESS_KEY variable'; exit 1; }
+[[ -z 'AWS_SECRET_KEY' ]] && { echo 'Missing $AWS_SECRET_KEY variable'; exit 2; }
+
+mkdir -p $HOME/bin
+cat <<EOF >> $HOME/.bash_profile
+export $AWS_ACCESS_KEY=$AWS_ACCESS_KEY
+export $AWS_SECRET_KEY=$AWS_SECRET_KEY
+EOF
+
+#
+# Lauch docker and pull the container when DOCKER variable is defined
+#
+if [ -z "DOCKER" ]; then
+    docker pull $DOCKER
+fi
+
+# the bucket name
+AWS_S3BUCKET=${AWS_S3BUCKET:-'nxf-cluster'}
+
+#
+# Install NEXTFLOW and launch it
+#
+curl -fsSL http://get.nextflow.io > $HOME/bin/nextflow 
+chmod +x $HOME/bin/nextflow
+$HOME/bin/nextflow -bg \
+  -daemon.name gridgain \
+  -daemon.interface eth0 \
+  -daemon.join s3:$AWS_S3BUCKET
+
+# save the environment for debugging 
+env | sort > .boot.env
+
+

docs/operator.rst

@@ -264,7 +264,7 @@ returns the items so obtained as a new channel. The function applied is called t
 and is expressed with a :ref:`closure <script-closure>` as shown in the example below::
 
     Channel
-        .from( 1, 2, 3, 4, ,5 )
+        .from( 1, 2, 3, 4, 5 )
         .map { it * it  }
         .subscribe onNext: { println it }, onComplete: { println 'Done' }