Sync pandas-stubs and pandas dependency versions #3219

Job	Run time
test (python=3.9 biopython=1.80)	13m 8s
pathogen-repo-ci (dengue)	2m 41s
test (python=3.9 biopython=1.82)	12m 56s
pathogen-repo-ci (lassa)	7m 57s
test (python=3.9 biopython=latest)	13m 21s
pathogen-repo-ci (measles)	1m 22s
test (python=3.10 biopython=1.80)	13m 39s
pathogen-repo-ci (mpox)	1m 27s
test (python=3.10 biopython=1.82)	13m 48s
check-docs	39s
pathogen-repo-ci (oropouche)	1m 29s
test (python=3.10 biopython=latest)	13m 25s
pathogen-repo-ci-v0 (avian-flu)	54s
pathogen-repo-ci (rabies)	3m 22s
test (python=3.11 biopython=1.80)	13m 40s
pathogen-repo-ci-v0 (ebola)	54s
pathogen-repo-ci (seasonal-cov)	1m 26s
pyright	14s
test (python=3.11 biopython=1.82)	14m 5s
pathogen-repo-ci-v0 (mumps)	55s
pathogen-repo-ci (wnv)	1m 3s
test (python=3.11 biopython=latest)	13m 14s
pathogen-repo-ci-v0 (ncov)	1m 9s
pathogen-repo-ci (yellow-fever)	4m 21s
test (python=3.12 biopython=1.82)	20m 35s
pathogen-repo-ci-v0 (rsv)	8m 41s
pathogen-repo-ci (zika)	1m 2s
test (python=3.12 biopython=latest)	20m 19s
pathogen-repo-ci-v0 (seasonal-flu)	1m 9s
pathogen-repo-ci-v0 (tb)	1m 17s
mypy	1m 0s
build-docs / build	2m 53s
codecov	11s
release	0s
rebuild-docker-image	0s
	3h 28m 16s

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