Use custom values to define sequence format #3222

Job	Run time
check-docs	40s
mypy	57s
pathogen-repo-ci (dengue)	2m 39s
pathogen-repo-ci-v0 (avian-flu)	1m 2s
pyright	14s
pathogen-repo-ci (lassa)	8m 0s
pathogen-repo-ci-v0 (ebola)	55s
pathogen-repo-ci (measles)	1m 22s
pathogen-repo-ci-v0 (mumps)	58s
pathogen-repo-ci-v0 (ncov)	1m 10s
pathogen-repo-ci (mpox)	1m 18s
pathogen-repo-ci (oropouche)	1m 25s
pathogen-repo-ci-v0 (rsv)	8m 35s
test (python=3.9 biopython=1.80)	13m 25s
pathogen-repo-ci (rabies)	2m 21s
pathogen-repo-ci-v0 (seasonal-flu)	1m 15s
test (python=3.9 biopython=1.82)	13m 36s
pathogen-repo-ci-v0 (tb)	1m 18s
test (python=3.9 biopython=latest)	13m 3s
pathogen-repo-ci (seasonal-cov)	1m 25s
test (python=3.10 biopython=1.80)	14m 8s
pathogen-repo-ci (wnv)	1m 6s
test (python=3.10 biopython=1.82)	13m 42s
pathogen-repo-ci (yellow-fever)	4m 19s
test (python=3.10 biopython=latest)	13m 8s
pathogen-repo-ci (zika)	59s
test (python=3.11 biopython=1.80)	13m 22s
test (python=3.11 biopython=1.82)	13m 21s
test (python=3.11 biopython=latest)	13m 10s
test (python=3.12 biopython=1.82)	20m 11s
test (python=3.12 biopython=latest)	22m 8s
build-docs / build	2m 33s
codecov	13s
release	0s
rebuild-docker-image	0s
	3h 27m 58s

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