Use custom values to define sequence format #3236

Job	Run time
mypy	1m 1s
check-docs	43s
pathogen-repo-ci (dengue)	2m 41s
pathogen-repo-ci-v0 (avian-flu)	53s
pathogen-repo-ci (lassa)	7m 34s
pathogen-repo-ci-v0 (ebola)	52s
pyright	23s
pathogen-repo-ci (measles)	1m 22s
test (python=3.9 biopython=1.80)	13m 43s
pathogen-repo-ci-v0 (mumps)	54s
pathogen-repo-ci (mpox)	1m 26s
test (python=3.9 biopython=1.82)	13m 38s
pathogen-repo-ci-v0 (ncov)	1m 6s
pathogen-repo-ci (oropouche)	1m 35s
test (python=3.9 biopython=latest)	13m 29s
pathogen-repo-ci-v0 (rsv)	8m 54s
pathogen-repo-ci (rabies)	2m 44s
test (python=3.10 biopython=1.80)	14m 6s
pathogen-repo-ci-v0 (seasonal-flu)	1m 18s
pathogen-repo-ci (seasonal-cov)	1m 26s
test (python=3.10 biopython=1.82)	13m 54s
pathogen-repo-ci-v0 (tb)	1m 23s
pathogen-repo-ci (wnv)	1m 7s
test (python=3.10 biopython=latest)	13m 55s
pathogen-repo-ci (yellow-fever)	4m 15s
test (python=3.11 biopython=1.80)	13m 34s
pathogen-repo-ci (zika)	1m 7s
test (python=3.11 biopython=1.82)	13m 34s
test (python=3.11 biopython=latest)	14m 1s
test (python=3.12 biopython=1.82)	20m 25s
test (python=3.12 biopython=latest)	21m 19s
build-docs / build	2m 39s
codecov	11s
release	0s
rebuild-docker-image	0s
	3h 31m 12s

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