update tests

nextstrain · Feb 11, 2025 · ae6be46 · ae6be46
1 parent b0799eb
commit ae6be46
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diff --git a/tests/functional/tree/cram/iqtree-offending-characters.t b/tests/functional/tree/cram/iqtree-offending-characters.t
@@ -11,8 +11,8 @@ Build a tree with offending characters, and ensure characters are not overwritte
   >  --nthreads 1 | head -n 1
   WARNING: Potentially offending character "'" detected in taxon name "KX369547.1/Cote_d'Ivore".  We recommend replacing offending characters with '_' in the alignment file to avoid issues downstream.
 
-  $ cat "tree_raw.nwk" | grep -q "Cote_d'Ivore" && echo "Substring found"
+  $ cat "tree_raw.nwk" | grep -q "'KX369547.1/Cote_d''Ivore'" && echo "Substring found"
   Substring found
 
-  $ cat "tree_raw.nwk" | grep -q "United-Arab-Emirates" && echo "Substring found"
+  $ cat "tree_raw.nwk" | grep -q "1_0181_PF/@United-Arab-Emirates" && echo "Substring found"
   Substring found
diff --git a/tests/functional/tree/data/aligned_offending_characters.fasta b/tests/functional/tree/data/aligned_offending_characters.fasta
@@ -360,7 +360,7 @@ GATGGGAAAAGAAGGTGGCGACCTTCCCCACCCTTCAATCTGGGGCCTGAACTGGAGATC
 AGCTGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
->1_0181_PF/United-Arab-Emirates
+>1_0181_PF/@United-Arab-Emirates
 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATCAACAGGTTTT
 ATTTGGATTTGGAAACGAGAGTTTCTGGTCATGAAAAACCCAAAAAAGAAATCCGGAGGA
 TTCCGGATTGTCAATATGCTAAAACGCGGAGTAGCCCGTGTGAGCCCCTTTGGGGGCTTG