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Remove augur.utils.read strains #1749

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@joverlee521 joverlee521 commented Feb 10, 2025

Description of proposed changes

augur.utils.read_strains has been deprecated since January 2024.
Remove it so we stop duplicating augur.io.read_strains.

Related issue(s)

Resolves #1747

Checklist

  • Automated checks pass
  • Check if you need to add a changelog message
  • Check if you need to add tests
  • Check if you need to update docs

@joverlee521 joverlee521 force-pushed the remove-utils-read-strains branch from b11dbae to d3146be Compare February 10, 2025 21:06
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codecov bot commented Feb 10, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 73.12%. Comparing base (e6df775) to head (7925efc).

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #1749   +/-   ##
=======================================
  Coverage   73.11%   73.12%           
=======================================
  Files          79       79           
  Lines        8350     8345    -5     
  Branches     1704     1704           
=======================================
- Hits         6105     6102    -3     
+ Misses       1958     1956    -2     
  Partials      287      287           

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`augur.utils.read_strains` has been deprecated since January 2024.
Remove it so we stop duplicating `augur.io.read_strains`.
@joverlee521 joverlee521 force-pushed the remove-utils-read-strains branch from 3e88bd9 to 7925efc Compare February 11, 2025 21:46
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Rebased to fix merge conflicts in changelog.

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Remove augur.utils.read_strains
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