flu: update h1n1pdm clades, reference trees for other datasets

nextstrain · Jan 19, 2025 · d52be59 · d52be59
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diff --git a/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/CY121680/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - include subclades C.1.9.1 - C.1.9.4 based on subclade proposals C.1.9.a/b/c/d
+
 ## 2025-01-09T08:17:24Z
 
  - add subclade proposals C.1.9.a/b/c/d

diff --git a/data/nextstrain/flu/h1n1pdm/ha/CY121680/sequences.fasta b/data/nextstrain/flu/h1n1pdm/ha/CY121680/sequences.fasta
diff --git a/data/nextstrain/flu/h1n1pdm/ha/CY121680/tree.json b/data/nextstrain/flu/h1n1pdm/ha/CY121680/tree.json
diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md b/data/nextstrain/flu/h1n1pdm/ha/MW626062/CHANGELOG.md
@@ -1,3 +1,8 @@
+## Unreleased
+
+ - include subclades C.1.9.1 - C.1.9.4 based on subclade proposals C.1.9.a/b/c/d
+
+
 ## 2025-01-09T08:17:24Z
 
  - add subclade proposals C.1.9.a/b/c/d

diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/sequences.fasta b/data/nextstrain/flu/h1n1pdm/ha/MW626062/sequences.fasta
diff --git a/data/nextstrain/flu/h1n1pdm/ha/MW626062/tree.json b/data/nextstrain/flu/h1n1pdm/ha/MW626062/tree.json
diff --git a/data/nextstrain/flu/h1n1pdm/na/MW626056/sequences.fasta b/data/nextstrain/flu/h1n1pdm/na/MW626056/sequences.fasta
diff --git a/data/nextstrain/flu/h1n1pdm/na/MW626056/tree.json b/data/nextstrain/flu/h1n1pdm/na/MW626056/tree.json
diff --git a/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/CY163680/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - update reference trees
+
 ## 2025-01-09T08:17:24Z
 
  - include subclade proposals for J.2.a/b/c/d/e

diff --git a/data/nextstrain/flu/h3n2/ha/CY163680/sequences.fasta b/data/nextstrain/flu/h3n2/ha/CY163680/sequences.fasta
diff --git a/data/nextstrain/flu/h3n2/ha/CY163680/tree.json b/data/nextstrain/flu/h3n2/ha/CY163680/tree.json
diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md b/data/nextstrain/flu/h3n2/ha/EPI1857216/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - update reference trees
+
 ## 2025-01-09T08:17:24Z
 
  - include subclade proposals for J.2.a/b/c/d/e

diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/sequences.fasta b/data/nextstrain/flu/h3n2/ha/EPI1857216/sequences.fasta
diff --git a/data/nextstrain/flu/h3n2/ha/EPI1857216/tree.json b/data/nextstrain/flu/h3n2/ha/EPI1857216/tree.json
diff --git a/data/nextstrain/flu/h3n2/na/EPI1857215/CHANGELOG.md b/data/nextstrain/flu/h3n2/na/EPI1857215/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - update reference trees
+
 ## 2025-01-09T08:17:24Z
 
  - update reference tree

diff --git a/data/nextstrain/flu/h3n2/na/EPI1857215/sequences.fasta b/data/nextstrain/flu/h3n2/na/EPI1857215/sequences.fasta
diff --git a/data/nextstrain/flu/h3n2/na/EPI1857215/tree.json b/data/nextstrain/flu/h3n2/na/EPI1857215/tree.json
diff --git a/data/nextstrain/flu/vic/ha/KX058884/CHANGELOG.md b/data/nextstrain/flu/vic/ha/KX058884/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - update reference trees
+
 ## 2024-11-05T09:19:52Z
 
  - update reference trees

diff --git a/data/nextstrain/flu/vic/ha/KX058884/sequences.fasta b/data/nextstrain/flu/vic/ha/KX058884/sequences.fasta
diff --git a/data/nextstrain/flu/vic/ha/KX058884/tree.json b/data/nextstrain/flu/vic/ha/KX058884/tree.json
diff --git a/data/nextstrain/flu/vic/na/CY073894/CHANGELOG.md b/data/nextstrain/flu/vic/na/CY073894/CHANGELOG.md
@@ -1,3 +1,7 @@
+## Unreleased
+
+ - update reference trees
+
 ## 2024-11-05T09:19:52Z
 
  - update reference trees

diff --git a/data/nextstrain/flu/vic/na/CY073894/sequences.fasta b/data/nextstrain/flu/vic/na/CY073894/sequences.fasta
diff --git a/data/nextstrain/flu/vic/na/CY073894/tree.json b/data/nextstrain/flu/vic/na/CY073894/tree.json