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GH Action cache check needs to be updated #20

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joverlee521 opened this issue Oct 23, 2024 · 0 comments · Fixed by #21
Closed
1 of 2 tasks

GH Action cache check needs to be updated #20

joverlee521 opened this issue Oct 23, 2024 · 0 comments · Fixed by #21
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joverlee521 commented Oct 23, 2024

Following #18, the files that the ingest workflow updates on S3 has been changed to 1 metadata TSV + 3 FASTAs. The cache has not been updated since that PR has been merged because the GH Action workflow is checking old S3 URLs:

s3_urls=(
"s3://nextstrain-data/files/workflows/oropouche/all/metadata.tsv.zst"
"s3://nextstrain-data/files/workflows/oropouche/all/sequences.fasta.zst"
)

TODOs

  • Update S3 URLs to match latest files
  • Delete the old files on S3
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