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Important! Template update for nf-core/tools v2.9 #177

Merged
merged 8 commits into from
Sep 21, 2023
Merged

Important! Template update for nf-core/tools v2.9 #177

merged 8 commits into from
Sep 21, 2023

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nf-core-bot
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Version 2.9 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.9 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/developers/sync.

For more information about this release of nf-core/tools, please see the v2.9 release page.

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github-actions bot commented Sep 21, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit c3ed8e4

+| ✅ 148 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   5 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • files_exist - File not found: lib/WorkflowFetchngs.groovy
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/fetchngs/fetchngs/.github/workflows/awstest.yml

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-09-21 13:10:16

@maxulysse
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Thanks @adamrtalbot

@maxulysse maxulysse merged commit 18acaf4 into dev Sep 21, 2023
@maxulysse maxulysse deleted the nf-core-template-merge-2.9 branch September 21, 2023 13:17
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@adamrtalbot adamrtalbot adamrtalbot approved these changes

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@nf-core-bot @maxulysse @adamrtalbot