nf-core CI

Fix taxonomy merging scripts and ouput #1431

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Triggered via pull request January 15, 2025 12:29

Darcy220606

synchronize #435

fix_taxonomy_files

Status Success

Total duration 35m 44s

Artifacts –

ci.yml

on: pull_request

Choose nextflow versions to test against depending on target branch

Matrix: test

Annotations

25 warnings

Choose nextflow versions to test against depending on target branch

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_nothing | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_nothing | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_preannotated | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_preannotated | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636