nf-core CI

Merge pull request #437 from nf-core/fix-rgi-db-name-issue #1439

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Triggered via push January 16, 2025 11:41

jasmezz

dev

Status Failure

Total duration 36m 58s

Artifacts –

ci.yml

on: push

Choose nextflow versions to test against depending on target branch

Matrix: test

Annotations

18 errors and 25 warnings

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_bakta: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_bakta: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 16 of 17 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 15 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Choose nextflow versions to test against depending on target branch

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_nothing | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_nothing | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_preannotated | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_preannotated | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Run pipeline with test data (latest-everything | test_prokka | docker)

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636