Fix prettier linting

nf-core · Feb 7, 2024 · 996b754 · 996b754
1 parent 120c95f
commit 996b754
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -229,9 +229,9 @@ try {
 // Load nf-core/funcscan custom profiles from different institutions.
 
 try {
-  includeConfig "${params.custom_config_base}/pipeline/funcscan.config"
+    includeConfig "${params.custom_config_base}/pipeline/funcscan.config"
 } catch (Exception e) {
-  System.err.println("WARNING: Could not load nf-core/config/funcscan profiles: ${params.custom_config_base}/pipeline/funcscan.config")
+    System.err.println("WARNING: Could not load nf-core/config/funcscan profiles: ${params.custom_config_base}/pipeline/funcscan.config")
 }
 
 profiles {

diff --git a/subworkflows/local/amp.nf b/subworkflows/local/amp.nf
@@ -109,10 +109,10 @@ workflow AMP {
                 input: [ it[0] ]
                 summary: it[1]
         }
-    
+
     ch_tabix_input = Channel.of(['id':'ampcombi_complete_summary'])
         .combine(ch_ampcombi_summaries_out.summary.collectFile(name: 'ampcombi_complete_summary.csv', keepHeader:true))
-    
+
     TABIX_BGZIP(ch_tabix_input)
 
     emit:

diff --git a/subworkflows/local/arg.nf b/subworkflows/local/arg.nf
@@ -24,7 +24,7 @@ workflow ARG {
     main:
     ch_versions = Channel.empty()
 
-     // Prepare HAMRONIZATION reporting channel
+    // Prepare HAMRONIZATION reporting channel
     ch_input_to_hamronization_summarize = Channel.empty()
 
     // AMRfinderplus run