Fix linting errors

nf-core · Oct 23, 2024 · d744c99 · d744c99
1 parent 57762a7
commit d744c99
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Showing 6 changed files with 253 additions and 256 deletions.
diff --git a/conf/test_bgc_bakta.config b/conf/test_bgc_bakta.config
@@ -22,11 +22,6 @@ params {
     config_profile_name              = 'BGC Bakta test profile'
     config_profile_description       = 'Minimal test dataset to check BGC workflow function'
 
-    // Limit resources so that this can run on GitHub Actions
-    max_cpus                         = 2
-    max_memory                       = '8.GB'
-    max_time                         = '6.h'
-
     // Input data
     input                            = params.pipelines_testdata_base_path + 'funcscan/samplesheet_reduced.csv'
 

diff --git a/modules.json b/modules.json
@@ -167,7 +167,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "878d2adbb911aa6e15c06a4d1e93d01bd6f26c74",
+                        "git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
                         "installed_by": ["modules"]
                     },
                     "prodigal": {

diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
diff --git a/nextflow.config b/nextflow.config
@@ -33,9 +33,6 @@ params {
     version                      = false
     pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/'
 
-    // To stop the random warning coming from nf-validation, remove on upgrade to nf-schema
-    monochromeLogs = null
-
     // Taxonomy classification options
     run_taxa_classification                          = false
     taxa_classification_tool                         = 'mmseqs2'
@@ -433,6 +430,7 @@ manifest {
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.04.2'
     version         = '2.1.0dev'
+    doi             = '10.5281/zenodo.7643099'
 }
 
 // Nextflow plugins