Add comBGC #188
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Add comBGC #188
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Update comBGC branch to latest dev
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louperelo
approved these changes
Jan 20, 2023
subworkflows/local/bgc.nf
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| COMBGC ( ch_bgcresults_for_combgc ) | ||
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| ch_combgc_summaries = COMBGC.out.tsv | ||
| .collectFile(name: 'combgc_complete_summary.csv', storeDir: "${params.outdir}/reports/combgc", keepHeader:true) |
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To have it right in the output.md: will you have a summary for each sample plus the complete_summary in the output folder?
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Exactly. Each sample gets an output in:
reports/combgc/sampleX/combgc_summary.tsv, and there is the concatenated version in:
reports/combgc/combgc_complete_summary.tsv
Co-authored-by: louperelo <[email protected]>
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What documentation is missing? comBGC is mentioned in |
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Ah fair point re docs, I'm surprised it was doucmented before it was in 😆 , see my questions on slack - will review this now again |
jfy133
approved these changes
Jan 25, 2023
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Closes #64
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).