Merge pull request #435 from nf-core/fix_taxonomy_files #1684
GitHub Actions / JUnit Test Report
failed
Jan 15, 2025 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
Check failure on line 1 in Test pipeline: NFCORE_FUNCSCAN
github-actions / JUnit Test Report
Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal
Assertion failed:
15 of 17 assertions failed
Raw output
Nextflow stdout:
ERROR ~ Error executing process > 'NFCORE_FUNCSCAN:FUNCSCAN:ARG:ABRICATE_RUN (sample_2)'
Caused by:
Process `NFCORE_FUNCSCAN:FUNCSCAN:ARG:ABRICATE_RUN (sample_2)` terminated with an error exit status (125)
Command executed:
abricate \
sample_2.fasta \
--db ncbi --minid 80 --mincov 80 \
\
--threads 4 \
> sample_2.txt
cat <<-END_VERSIONS > versions.yml
"NFCORE_FUNCSCAN:FUNCSCAN:ARG:ABRICATE_RUN":
abricate: $(echo $(abricate --version 2>&1) | sed 's/^.*abricate //' )
END_VERSIONS
Command exit status:
125
Command output:
(empty)
Command error:
Unable to find image 'quay.io/biocontainers/abricate:1.0.1--ha8f3691_1' locally
docker: Error response from daemon: unauthorized: authentication required.
See 'docker run --help'.
Work dir:
/home/runner/work/funcscan/funcscan/.nf-test/tests/237a9cc7d7305da4ae99f8a5873c779a/work/81/296d90d65633d346262fc8ee0f78ba
Container:
quay.io/biocontainers/abricate:1.0.1--ha8f3691_1
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
-- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/237a9cc7d7305da4ae99f8a5873c779a/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-- Check '/home/runner/work/funcscan/funcscan/.nf-test/tests/237a9cc7d7305da4ae99f8a5873c779a/meta/nextflow.log' file for details
Nextflow stderr:
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