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Fix links in README.md
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christopher-mohr committed Aug 21, 2020
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Expand Up @@ -35,11 +35,11 @@ The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool
nextflow run nf-core/hlatyping -profile <docker/singularity/conda/institute> --input '*_R{1,2}.fastq.gz'
```

See [usage docs](docs/usage.md) for all of the available options when running the pipeline.
See [usage docs](https://nf-co.re/hlatyping/usage) for all of the available options when running the pipeline.

## Documentation

The nf-core/hlatyping pipeline comes with documentation about the pipeline which you can read at [https://nf-core/hlatyping/docs](https://nf-core/hlatyping/docs) or find in the [`docs/` directory](docs).
The nf-core/hlatyping pipeline comes with documentation about the pipeline which you can read at [https://nf-co.re/hlatyping](https://nf-co.re/hlatyping).

### Pipeline DAG

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