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Support for NuGen Ovation RRBS libraries #379

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Support for NuGen Ovation RRBS libraries #379

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jma1991 Feb 14, 2024
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jma1991 Feb 14, 2024
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Fixed left-padding
jma1991 Feb 14, 2024
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4 changes: 4 additions & 0 deletions CITATIONS.md
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Expand Up @@ -29,6 +29,10 @@
<!-- TODO https://github.com/FelixKrueger/TrimGalore/issues/25 -->
<!-- https://zenodo.org/records/7598955 -->

- [NuMetRRBS](https://github.com/nugentechnologies/NuMetRRBS)

> <https://github.com/nugentechnologies/NuMetRRBS>

- [Bismark](https://doi.org/10.1093/bioinformatics/btr167)

> Felix Krueger, Simon R. Andrews, Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications, Bioinformatics, Volume 27, Issue 11, 1 June 2011, Pages 1571–1572, doi: [10.1093/bioinformatics/btr167](https://doi.org/10.1093/bioinformatics/btr167)
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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -35,6 +35,7 @@ Choose between workflows by using `--aligner bismark` (default, uses bowtie2 for
| Merge re-sequenced FastQ files | cat | cat |
| Raw data QC | FastQC | FastQC |
| Adapter sequence trimming | Trim Galore! | Trim Galore! |
| Diversity sequence trimming | NuMetRRBS | NuMetRRBS |
| Align Reads | Bismark | bwa-meth |
| Deduplicate Alignments | Bismark | Picard MarkDuplicates |
| Extract methylation calls | Bismark | MethylDackel |
Expand Down Expand Up @@ -95,6 +96,7 @@ These scripts were originally written for use at the [National Genomics Infrastr
- Rickard Hammarén ([@Hammarn](https://github.com/Hammarn/))
- Alexander Peltzer ([@apeltzer](https://github.com/apeltzer/))
- Patrick Hüther ([@phue](https://github.com/phue/))
- James Ashmore ([@jma1991](https://github.com/jma1991/))

## Contributions and Support

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