Add threads to fgbio callmolecularconsensus module (#2892)

Add threads to module
nf-core · Feb 27, 2023 · 40ce6b3 · 40ce6b3
1 parent bd4b60c
commit 40ce6b3
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/modules/nf-core/fgbio/callmolecularconsensusreads/main.nf b/modules/nf-core/fgbio/callmolecularconsensusreads/main.nf
@@ -24,9 +24,10 @@ process FGBIO_CALLMOLECULARCONSENSUSREADS {
     fgbio \\
         --tmp-dir=. \\
         CallMolecularConsensusReads \\
-        -i $bam \\
+        --input $bam \\
+        --threads ${task.cpus} \\
         $args \\
-        -o ${prefix}.bam
+        --output ${prefix}.bam
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":