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Release 1.4 #121

Merged
merged 86 commits into from
Jan 22, 2025
Merged

Release 1.4 #121

merged 86 commits into from
Jan 22, 2025

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fbdtemme
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@fbdtemme fbdtemme commented Dec 13, 2024

[1.4.0] - 2024-01-16

Enhancements & fixes

  • [PR #111] - Template update for nf-core/tools v3.0.2
  • [PR #112] - Add graph refinement options for pixelator 0.19
  • [PR #113] - Fix validation issues after nf-core/tools v3.0.2 update
  • [PR #114] - Remove --save_recovered_components options for graph outputs
  • [PR #115] - Update containers for pixelator 0.19
  • [PR #116] - Bump version to 1.4
  • [PR #117] - Template update for nf-core/tools v3.1.0
  • [PR #118] - Update metromap, bump conda versions
  • [PR #120] - Add process_long to AMPLICON and COLLAPSE steps
  • [PR #122] - Template update for nf-core/tools v3.1.1
  • [PR #124] - Add manifest.contributors metadata to nextflow.config
  • [PR #125] - Use environment.yml files for all conda process directives
  • [PR #123] - Add nf-test tests for local modules and subworkflows

nf-core-bot and others added 30 commits October 8, 2024 12:31
Important! Template update for nf-core/tools v3.0.2
Add graph refinement options for pixelator 0.19
Fix validation issues after nf-core/tools v3 template update
…overed

Remove `--save_recovered_components` options for graph outputs
fbdtemme and others added 22 commits January 15, 2025 11:20
Add manifest.contributors metadata to nextflow.config
Use environment.yml files for all conda process directives
Add nf-test tests for local modules and subworkflows
- Fix ordering of sections in  Pipeline overview
- Remove unclear `multiplet_recovery` sentence
@fbdtemme fbdtemme marked this pull request as ready for review January 16, 2025 12:18
@fbdtemme fbdtemme requested a review from sateeshperi January 16, 2025 12:21
@fbdtemme
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fbdtemme commented Jan 16, 2025

It took a while but tests are added and all comments should be addressed now.
The remaining tests failures are because of a nextflow bug in the 24.04 series that has been fixed later. Can you recheck @sateeshperi ? Thanks!

@fbdtemme fbdtemme removed the request for review from mashehu January 20, 2025 14:48
@fbdtemme fbdtemme merged commit 42424bb into master Jan 22, 2025
125 of 130 checks passed
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5 participants