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Upgrade Comet to latest 20223010 version #88

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Mar 24, 2023
Merged

Upgrade Comet to latest 20223010 version #88

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4 changes: 2 additions & 2 deletions modules/local/openms/thirdparty/luciphoradapter/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process LUCIPHORADAPTER {

conda "bioconda::openms-thirdparty=2.9.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_0' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_0' }"
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_1' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_1' }"

input:
tuple val(meta), path(mzml_file), path(id_file)
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4 changes: 2 additions & 2 deletions modules/local/openms/thirdparty/percolator/main.nf
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Expand Up @@ -4,8 +4,8 @@ process PERCOLATOR {

conda "bioconda::openms-thirdparty=2.9.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_0' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_0' }"
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_1' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_1' }"

input:
tuple val(meta), path(id_file)
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4 changes: 2 additions & 2 deletions modules/local/openms/thirdparty/searchenginecomet/main.nf
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Expand Up @@ -4,8 +4,8 @@ process SEARCHENGINECOMET {

conda "bioconda::openms-thirdparty=2.9.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_0' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_0' }"
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_1' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_1' }"

input:
tuple val(meta), file(mzml_file), file(database)
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4 changes: 2 additions & 2 deletions modules/local/openms/thirdparty/searchenginemsgf/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SEARCHENGINEMSGF {

conda "bioconda::openms-thirdparty=2.9.1"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_0' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_0' }"
'https://depot.galaxyproject.org/singularity/openms-thirdparty:2.9.1--h9ee0642_1' :
'quay.io/biocontainers/openms-thirdparty:2.9.1--h9ee0642_1' }"

input:
tuple val(meta), file(mzml_file), file(database)
Expand Down