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Add FASTQ linting during preprocessing #3166

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Add FASTQ linting during preprocessing

Add FASTQ linting during preprocessing #3166

Run time

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Job Run time
Check for changes
19s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
1m 48s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)
1m 50s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
1m 49s
Run tests (tests/kallisto.nf.test singularity NF-24.04.2)
1m 50s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
1m 50s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)
1m 52s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
1m 50s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)
1m 50s
Run tests (tests/default.nf.test docker NF-24.04.2)
1m 51s
Run tests (tests/default.nf.test singularity NF-24.04.2)
1m 56s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
1m 53s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)
1m 54s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
1m 55s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)
1m 50s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
1m 56s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test singularity NF-24.04.2)
1m 52s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
1m 56s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)
1m 52s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
1m 50s
Run tests (tests/skip_trimming.nf.test singularity NF-24.04.2)
1m 49s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
1m 50s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)
1m 49s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
1m 50s
Run tests (tests/featurecounts_group_type.nf.test singularity NF-24.04.2)
1m 51s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
1m 48s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
1m 48s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
1m 48s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
1m 48s
Run tests (tests/default.nf.test docker NF-latest-everything)
1m 38s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
1m 50s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
1m 50s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
1m 47s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
1m 50s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
1m 53s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
1m 50s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
1m 49s
confirm-pass
1s
1h 6m 32s