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Add FASTQ linting during preprocessing #3167

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Add FASTQ linting during preprocessing

Add FASTQ linting during preprocessing #3167

Run time

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Job Run time
Check for changes
23s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
3m 5s
Run tests (tests/default.nf.test docker NF-24.04.2)
2m 48s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
2m 36s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
4m 10s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
4m 40s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
3m 11s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
2m 58s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
4m 53s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
4m 32s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
4m 50s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
3m 8s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
5m 21s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
2m 48s
Run tests (tests/default.nf.test docker NF-latest-everything)
2m 51s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
2m 52s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
3m 5s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
2m 51s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
2m 44s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
4m 10s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
4m 59s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
2m 53s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
2m 57s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
2m 44s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
2m 39s
confirm-pass
1s
1h 24m 9s