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Add FASTQ linting during preprocessing #3174

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Add FASTQ linting during preprocessing

Add FASTQ linting during preprocessing #3174

Run time

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Job Run time
Check for changes
22s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
16m 11s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
13m 38s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
15m 15s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
14m 14s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
18m 46s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
8m 29s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
12m 32s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-24.04.2)
4m 5s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
4m 18s
Run tests (tests/default.nf.test docker NF-24.04.2)
16m 52s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
11m 59s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
11m 5s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
4m 35s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
14m 35s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
14m 6s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
14m 20s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
13m 37s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
8m 14s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
8m 13s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
12m 10s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-latest-everything)
3m 5s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
5m 33s
Run tests (tests/default.nf.test docker NF-latest-everything)
16m 16s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
11m 41s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
8m 34s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
4m 22s
confirm-pass
1s
4h 47m 8s