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Add FASTQ linting during preprocessing #3177

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Add FASTQ linting during preprocessing

Add FASTQ linting during preprocessing #3177

Run time

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Job Run time
Check for changes
19s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
12m 14s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
4m 40s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
8m 48s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
3m 59s
Run tests (tests/default.nf.test docker NF-24.04.2)
14m 50s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
16m 10s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
16m 8s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
13m 36s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
16m 10s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
11m 40s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-24.04.2)
4m 57s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
8m 41s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
6m 18s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
12m 4s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
3m 19s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
10m 36s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
3m 52s
Run tests (tests/default.nf.test docker NF-latest-everything)
13m 57s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
16m 7s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
13m 43s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
13m 10s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
13m 56s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
11m 31s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-latest-everything)
2m 45s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
8m 4s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
13m 49s
confirm-pass
1s
4h 35m 24s