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Add test suite for UMI handling functionality #3189

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Add test suite for UMI handling functionality

Add test suite for UMI handling functionality #3189

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Job Run time
Check for changes
36s
Run tests (tests/default.nf.test docker NF-24.04.2)
14m 38s
Run tests (tests/default.nf.test singularity NF-24.04.2)
17m 6s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
14m 2s
Run tests (tests/min_mapped_reads.nf.test singularity NF-24.04.2)
16m 1s
Run tests (tests/umi.nf.test docker NF-24.04.2)
14m 20s
Run tests (tests/umi.nf.test singularity NF-24.04.2)
13m 42s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-24.04.2)
3m 9s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test singularity NF-24.04.2)
3m 21s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-24.04.2)
8m 18s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test singularity NF-24.04.2)
6m 27s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-24.04.2)
3m 13s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test singularity NF-24.04.2)
6m 18s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
9m 12s
Run tests (tests/salmon.nf.test singularity NF-24.04.2)
13m 29s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
15m 10s
Run tests (tests/skip_trimming.nf.test singularity NF-24.04.2)
19m 20s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2)
2m 56s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test singularity NF-24.04.2)
4m 51s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-24.04.2)
5m 15s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test singularity NF-24.04.2)
6m 42s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2)
7m 9s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test singularity NF-24.04.2)
7m 23s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-24.04.2)
6m 13s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test singularity NF-24.04.2)
8m 51s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
8m 49s
Run tests (tests/kallisto.nf.test singularity NF-24.04.2)
8m 36s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
11m 39s
Run tests (tests/skip_qc.nf.test singularity NF-24.04.2)
14m 38s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
15m 7s
Run tests (tests/featurecounts_group_type.nf.test singularity NF-24.04.2)
21m 54s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2)
2m 42s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test singularity NF-24.04.2)
3m 3s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
13m 50s
Run tests (tests/hisat2.nf.test singularity NF-24.04.2)
20m 4s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
15m 58s
Run tests (tests/star_rsem.nf.test singularity NF-24.04.2)
17m 17s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-24.04.2)
4m 3s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test singularity NF-24.04.2)
4m 18s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
20m 28s
Run tests (tests/remove_ribo_rna.nf.test singularity NF-24.04.2)
18m 42s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-24.04.2)
2m 59s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test singularity NF-24.04.2)
3m 5s
Run tests (tests/default.nf.test docker NF-latest-everything)
14m 14s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
14m 35s
Run tests (tests/umi.nf.test docker NF-latest-everything)
14m 12s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.function.nf.test docker NF-latest-everything)
5m 19s
Run tests (modules/nf-core/umicollapse/tests/main.nf.test docker NF-latest-everything)
5m 11s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test docker NF-latest-everything)
2m 58s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
9m 11s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
13m 33s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything)
5m 1s
Run tests (subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test docker NF-latest-everything)
6m 16s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything)
7m 46s
Run tests (modules/nf-core/umitools/dedup/tests/main.nf.test docker NF-latest-everything)
4m 11s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
8m 29s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
13m 11s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
14m 29s
Run tests (subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything)
2m 41s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
15m 6s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
17m 47s
Run tests (subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test docker NF-latest-everything)
3m 22s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
19m 6s
Run tests (modules/nf-core/fq/lint/tests/main.nf.test docker NF-latest-everything)
4m 42s
confirm-pass
1s
10h 36m 15s