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drpatelh committed Feb 14, 2022
1 parent 4142ec8 commit 684b4f4
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions subworkflows/local/prepare_genome.nf
Original file line number Diff line number Diff line change
Expand Up @@ -20,8 +20,8 @@ include { BBMAP_BBSPLIT } from '../../modules/nf-core/module
include { HISAT2_EXTRACTSPLICESITES } from '../../modules/nf-core/modules/hisat2/extractsplicesites/main'
include { HISAT2_BUILD } from '../../modules/nf-core/modules/hisat2/build/main'
include { SALMON_INDEX } from '../../modules/nf-core/modules/salmon/index/main'
include { RSEM_PREPAREREFERENCE as RSEM_PREPAREREFERENCE_GENOME } from '../../modules/nf-core/modules/rsem/preparereference/main'
include { RSEM_PREPAREREFERENCE as MAKE_TRANSCRIPTS_FASTA } from '../../modules/nf-core/modules/rsem/preparereference/main'
include { RSEM_PREPAREREFERENCE as RSEM_PREPAREREFERENCE_GENOME } from '../../modules/nf-core/modules/rsem/preparereference/main'
include { RSEM_PREPAREREFERENCE as MAKE_TRANSCRIPTS_FASTA } from '../../modules/nf-core/modules/rsem/preparereference/main'

include { GTF2BED } from '../../modules/local/gtf2bed'
include { CAT_ADDITIONAL_FASTA } from '../../modules/local/cat_additional_fasta'
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