Update public_aws_ecr.config

nf-core · Jun 1, 2023 · f15b587 · f15b587
1 parent 22ff499
commit f15b587
Showing 1 changed file with 16 additions and 4 deletions.
diff --git a/conf/public_aws_ecr.config b/conf/public_aws_ecr.config
@@ -12,24 +12,30 @@ docker.registry = 'public.ecr.aws'
 podman.registry = 'public.ecr.aws'
 
 process {
+    withName: 'CAT_ADDITIONAL_FASTA' {
+        container = 'quay.io/biocontainers/python:3.9--1'
+    }
     withName: 'CAT_FASTQ' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
-    withName: 'SAMPLESHEET_CHECK|CAT_ADDITIONAL_FASTA|GTF_GENE_FILTER|MULTIQC_CUSTOM_BIOTYPE|SALMON_TX2GENE' {
-        container = 'quay.io/biocontainers/python:3.9--1'
+    withName: 'DESEQ2_QC' {
+        container = 'quay.io/biocontainers/mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91:ab110436faf952a33575c64dd74615a84011450b-0'
     }
     withName: 'GTF2BED' {
         container = 'quay.io/biocontainers/perl:5.26.2'
     }
-    withName: 'DESEQ2_QC' {
-        container = 'quay.io/biocontainers/mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91:ab110436faf952a33575c64dd74615a84011450b-0'
+    withName: 'GTF_GENE_FILTER' {
+        container = 'quay.io/biocontainers/python:3.9--1'
     }
     withName: 'GUNZIP' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
     withName: 'HISAT2_ALIGN' {
         container = 'quay.io/biocontainers/mulled-v2-a97e90b3b802d1da3d6958e0867610c718cb5eb1:2cdf6bf1e92acbeb9b2834b1c58754167173a410-0'
     }
+    withName: 'MULTIQC_CUSTOM_BIOTYPE' {
+        container = 'quay.io/biocontainers/python:3.9--1'
+    }
     withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' {
         container = 'quay.io/nf-core/ubuntu:20.04'
     }
@@ -42,6 +48,12 @@ process {
     withName: 'RSEM_PREPAREREFERENCE' {
         container = 'quay.io/biocontainers/mulled-v2-cf0123ef83b3c38c13e3b0696a3f285d3f20f15b:64aad4a4e144878400649e71f42105311be7ed87-0'
     }
+    withName: 'SALMON_TX2GENE' {
+        container = 'quay.io/biocontainers/python:3.9--1'
+    }
+    withName: 'SAMPLESHEET_CHECK' {
+        container = 'quay.io/biocontainers/python:3.9--1'
+    }
     withName: 'STAR_ALIGN' {
         container = 'quay.io/biocontainers/mulled-v2-1fa26d1ce03c295fe2fdcf85831a92fbcbd7e8c2:1df389393721fc66f3fd8778ad938ac711951107-0'
     }