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fix variable and correct version to parse gtf #234

Merged

drpatelh merged 1 commit into salmon from lpantano-salmon-patch

Jun 16, 2019

Contributor

lpantano commented Jun 15, 2019

Update with the right version to parse gtf and get the file tximport needs (there is a bug in there, I copy the wrong version in the last PR).

Fix variable name to match new naming format.

PR checklist

This comment contains a description of changes (with reason)
If you've fixed a bug or added code that should be tested, add tests!
If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repo
Ensure the test suite passes (nextflow run . -profile test,docker).
Make sure your code lints (nf-core lint .).
Documentation in docs is updated
CHANGELOG.md is updated
README.md is updated

Learn more about contributing: https://github.com/nf-core/rnaseq/tree/master/.github/CONTRIBUTING.md


          fix variable and correct version to parse gtf

c65197d

lpantano requested a review from drpatelh

June 15, 2019 13:58

drpatelh merged commit bfac38c into salmon

apeltzer deleted the lpantano-salmon-patch branch

July 8, 2019 13:16

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