Skip to content

Navigation Menu

Explore
By company size
By use case
By industry
View all solutions
Topics
- AI
- DevOps
- Security
- Software Development
- View all
Explore
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
- Enterprise platform
  AI-powered developer platform
Available add-ons
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

nf-core / rnaseq Public

Notifications You must be signed in to change notification settings
Fork 721
Star 983

Code
Issues 72
Pull requests 11
Actions
Security
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Security
Insights

ignore file

nf-core-template-merge-3.0.1

386d6bd

Refresh

Sign in for the full log view

nf-core CI on: pull_request 48

Check for changes

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2

modules/nf-core/umitools/extract/tests/main.nf.test docker NF-24.04.2

tests/skip_trimming.nf.test docker NF-24.04.2

tests/hisat2.nf.test docker NF-24.04.2

modules/nf-core/trimgalore/tests/main.nf.test docker NF-24.04.2

subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-24.04.2

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-24.04.2

tests/kallisto.nf.test docker NF-24.04.2

modules/nf-core/fastqc/tests/main.nf.test docker NF-24.04.2

tests/star_rsem.nf.test docker NF-24.04.2

tests/min_mapped_reads.nf.test docker NF-24.04.2

tests/salmon.nf.test docker NF-24.04.2

subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-24.04.2

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-24.04.2

tests/remove_ribo_rna.nf.test docker NF-24.04.2

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2

subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2

tests/featurecounts_group_type.nf.test docker NF-24.04.2

tests/skip_qc.nf.test docker NF-24.04.2

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-24.04.2

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2

tests/default.nf.test docker NF-24.04.2

modules/nf-core/multiqc/tests/main.nf.test docker NF-24.04.2

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything

subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything

modules/nf-core/umitools/extract/tests/main.nf.test docker NF-latest-everything

tests/skip_trimming.nf.test docker NF-latest-everything

tests/hisat2.nf.test docker NF-latest-everything

modules/nf-core/trimgalore/tests/main.nf.test docker NF-latest-everything

subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/tests/main.nf.test docker NF-latest-everything

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_completion.workflow.nf.test docker NF-latest-everything

tests/kallisto.nf.test docker NF-latest-everything

modules/nf-core/fastqc/tests/main.nf.test docker NF-latest-everything

tests/star_rsem.nf.test docker NF-latest-everything

tests/min_mapped_reads.nf.test docker NF-latest-everything

tests/salmon.nf.test docker NF-latest-everything

subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test docker NF-latest-everything

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.pipeline_initialisation.workflow.nf.test docker NF-latest-everything

tests/remove_ribo_rna.nf.test docker NF-latest-everything

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything

subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything

tests/featurecounts_group_type.nf.test docker NF-latest-everything

tests/skip_qc.nf.test docker NF-latest-everything

subworkflows/local/utils_nfcore_rnaseq_pipeline/tests/main.function.nf.test docker NF-latest-everything

subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything

tests/default.nf.test docker NF-latest-everything

modules/nf-core/multiqc/tests/main.nf.test docker NF-latest-everything

confirm-pass

nf-core linting on: pull_request 1

pre-commit

nf-core

JUnit Test Report

GitHub Actions / JUnit Test Report succeeded Oct 10, 2024 in 0s

8 tests run, 8 passed, 0 skipped, 0 failed.

View more details on GitHub Actions

Loading

Re-running jobs...

You can’t perform that action at this time.