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nf-core / smrnaseq Public

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Fork 126
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Fix the stacksize and pretty much everything else#311

Merged

apeltzer merged 17 commits intodevnf-core/smrnaseq:devfrom fix-stack-sizenf-core/smrnaseq:fix-stack-sizeCopy head branch name to clipboard

Feb 5, 2024

+189-56

Conversation Commits17 (17)Checks Files changed

Commits

Commits on Jan 30, 2024

Fix the stacksize
apeltzer
committed

Commits on Jan 31, 2024

Use the pipe Luke
apeltzer
committed
mirtrace back
apeltzer
committed
Bugfix
apeltzer
committed
fastq mode, we need to not extract the UMIs
apeltzer
committed
Adjusted to run umiextract after umicollapse
apeltzer
committed
Removed miRNA sequencing adapters due to new mode of data handling
apeltzer
committed

Commits on Feb 1, 2024

Fix wrong path
apeltzer
committed
Configuration
apeltzer
committed
ANd modules update
apeltzer
committed
UMI pattern was wrong
apeltzer
committed
add FASTP length filtering step after umi extract
christopher-mohr
committed
Merge remote-tracking branch 'refs/remotes/origin/fix-stack-size' into fix-stack-size
christopher-mohr
committed

Commits on Feb 2, 2024

fix module config name of FASTP process, add
christopher-mohr
committed
change default parameter values of FASTP max
christopher-mohr
committed
change FASTP module publish dir names
christopher-mohr
committed
adapt default value of param fastp_max_length
christopher-mohr
committed

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