Merge pull request #362 from ewels/master

Replace URL for joining slack

.github/CONTRIBUTING.md

@@ -6,7 +6,7 @@ We try to manage the required tasks for nf-core/tools using GitHub issues, you p
 
 However, don't be put off by this template - other more general issues and suggestions are welcome! Contributions to the code are even more welcome ;)
 
-> If you need help using or developing nf-core/tools then the best place to ask is the nf-core `tools` channel on [Slack](https://nf-core-invite.herokuapp.com/).
+> If you need help using or developing nf-core/tools then the best place to ask is the nf-core `tools` channel on [Slack](https://nf-co.re/join/slack/).
 
 ## Contribution workflow
 If you'd like to write some code for nf-core/tools, the standard workflow
@@ -68,4 +68,4 @@ nf-core lint nf-core-testpipeline
 ```
 
 ## Getting help
-For further information/help, please consult the [nf-core/tools documentation](https://github.com/nf-core/tools#documentation) and don't hesitate to get in touch on the nf-core `tools` channel on [Slack](https://nf-core-invite.herokuapp.com/).
+For further information/help, please consult the [nf-core/tools documentation](https://github.com/nf-core/tools#documentation) and don't hesitate to get in touch on the nf-core `tools` channel on [Slack](https://nf-co.re/join/slack/).

CHANGELOG.md

@@ -30,6 +30,7 @@
   to avoid weird behavior such as making an `s3:/` directory locally when using
   an AWS S3 bucket as the `--outdir`.
 * Fix workflow.onComplete() message when finishing pipeline
+* Update URL for joining the nf-core slack to https://nf-co.re/join/slack
 
 ### Other
 

nf_core/pipeline-template/{{cookiecutter.name_noslash}}/.github/CONTRIBUTING.md

@@ -6,7 +6,7 @@ We try to manage the required tasks for {{ cookiecutter.name }} using GitHub iss
 
 However, don't be put off by this template - other more general issues and suggestions are welcome! Contributions to the code are even more welcome ;)
 
-> If you need help using or modifying {{ cookiecutter.name }} then the best place to ask is on the pipeline channel on [Slack](https://nf-core-invite.herokuapp.com/).
+> If you need help using or modifying {{ cookiecutter.name }} then the best place to ask is on the pipeline channel on [Slack](https://nf-co.re/join/slack/).
 
 
 
@@ -44,4 +44,4 @@ If there are any failures then the automated tests fail.
 These tests are run both with the latest available version of Nextflow and also the minimum required version that is stated in the pipeline code.
 
 ## Getting help
-For further information/help, please consult the [{{ cookiecutter.name }} documentation](https://github.com/{{ cookiecutter.name }}#documentation) and don't hesitate to get in touch on the pipeline channel on [Slack](https://nf-core-invite.herokuapp.com/).
+For further information/help, please consult the [{{ cookiecutter.name }} documentation](https://github.com/{{ cookiecutter.name }}#documentation) and don't hesitate to get in touch on the pipeline channel on [Slack](https://nf-co.re/join/slack/).

nf_core/pipeline-template/{{cookiecutter.name_noslash}}/CODE_OF_CONDUCT.md

@@ -34,7 +34,7 @@ This Code of Conduct applies both within project spaces and in public spaces whe
 
 ## Enforcement
 
-Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting the project team on [Slack](https://nf-core-invite.herokuapp.com/). The project team will review and investigate all complaints, and will respond in a way that it deems appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting the project team on [Slack](https://nf-co.re/join/slack/). The project team will review and investigate all complaints, and will respond in a way that it deems appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.
 
 Project maintainers who do not follow or enforce the Code of Conduct in good faith may face temporary or permanent repercussions as determined by other members of the project's leadership.
 

nf_core/pipeline-template/{{cookiecutter.name_noslash}}/docs/usage.md

@@ -190,7 +190,7 @@ Wherever process-specific requirements are set in the pipeline, the default valu
 
 If you are likely to be running `nf-core` pipelines regularly it may be a good idea to request that your custom config file is uploaded to the `nf-core/configs` git repository. Before you do this please can you test that the config file works with your pipeline of choice using the `-c` parameter (see definition below). You can then create a pull request to the `nf-core/configs` repository with the addition of your config file, associated documentation file (see examples in [`nf-core/configs/docs`](https://github.com/nf-core/configs/tree/master/docs)), and amending [`nfcore_custom.config`](https://github.com/nf-core/configs/blob/master/nfcore_custom.config) to include your custom profile.
 
-If you have any questions or issues please send us a message on [Slack](https://nf-core-invite.herokuapp.com/).
+If you have any questions or issues please send us a message on [Slack](https://nf-co.re/join/slack/).
 
 ## AWS Batch specific parameters
 Running the pipeline on AWS Batch requires a couple of specific parameters to be set according to your AWS Batch configuration. Please use the `-awsbatch` profile and then specify all of the following parameters.