Code

Support multiple file versions#1247

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drpatelh merged 44 commits intonf-core:devnf-core/tools:devfrom mahesh-panchal:support_multiple_file_versionsCopy head branch name to clipboardSep 24, 2021

+153-122

Commits

Commits on Aug 12, 2021

• Change filter to support multiple version file outputs

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• Add collectFile to combine different versions

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• Change scrape versions to comma separate multiple versions

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• Update CHANGELOG.md

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• black lint update

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• Software versions as YAML output

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• Add comment to add version for each tool

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• Update output

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• Collect YAML files together

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• Add workflow data to software versions

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• Replace software versions tsv with yml

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• Update GET_SOFTWARE_VERSION channel names

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• Update nf_core/pipeline-template/modules/local/get_software_versions.nf

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• Move sed for readability

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• Update nf_core/module-template/modules/main.nf

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• Remove Dash from YAML

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• Port changes from prototype nf-core/rnaseq#689

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• Update comment

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• Update process output

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• Add getProcessName to modules functions_nf lint

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• Update file_exists lint to remove scrape_versions.py

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• Remove scrape software version from files unchanged.

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• Fix YAML output

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• Update nf_core/module-template/modules/main.nf

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• Remove getSoftwareName function

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• remove software var

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• Rename publish_dir directory

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• Update nf_core/module-template/modules/main.nf

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• Update version.txt reference to versions.yml

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• Update lint check for software

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• Make publish_dirs lowercase

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Commits on Aug 13, 2021

• Revert "Make publish_dirs lowercase"

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• Revert "Update lint check for software"

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• Revert "Rename publish_dir directory"

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• Revert "remove software var"

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• Revert "Remove getSoftwareName function"

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• Remove def software line

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• Remove reference to $software

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Commits on Sep 14, 2021

• Update output docs (software_versions.tsv ->software_versions.yml)

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Commits on Sep 23, 2021

• Do not update nf-core modules in pipeline template yet

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• Update functions.nf in module template and in local pipeline modules

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• Show linting messages when linting tests failed

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• Print linting error message

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• Update nf_core/pipeline-template/docs/output.md

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