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Bump Python version support #1680

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merged 4 commits into from
Jul 18, 2022
Merged

Bump Python version support #1680

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32a2e04
remove Python 3.6 support
fabianegli Jul 18, 2022
ce8418a
bump Python version pipeline-template github workflow
fabianegli Jul 18, 2022
9af2d07
support recent Python versions
fabianegli Jul 18, 2022
3fa233f
python version support changes
fabianegli Jul 18, 2022
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2 changes: 1 addition & 1 deletion .github/workflows/pytest.yml
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Expand Up @@ -10,7 +10,7 @@ jobs:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.6", "3.7", "3.8", "3.9", "3.10"]
python-version: ["3.7", "3.8", "3.9", "3.10"]

steps:
- uses: actions/checkout@v2
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -4,6 +4,7 @@

### Template

- Bumped Python version to 3.7 in the GitHub linting in the workflow template ([#1680](https://github.com/nf-core/tools/pull/1680))
- Fix bug in pipeline readme logo URL ([#1590](https://github.com/nf-core/tools/pull/1590))
- Switch CI to use [setup-nextflow](https://github.com/nf-core/setup-nextflow) action to install Nextflow ([#1650](https://github.com/nf-core/tools/pull/1650))
- Add `CITATION.cff` [#361](https://github.com/nf-core/tools/issues/361)
Expand All @@ -19,6 +20,8 @@

### General

- Remove support for Python 3.6 ([#1680](https://github.com/nf-core/tools/pull/1680))
- Add support for Python 3.9 and 3.10 ([#1680](https://github.com/nf-core/tools/pull/1680))
- Update `readme` to drop `--key` option from `nf-core modules list` and add the new pattern syntax
- Add `--fail-warned` flag to `nf-core lint` to make warnings fail ([#1593](https://github.com/nf-core/tools/pull/1593))
- Add `--fail-warned` flag to pipeline linting workflow ([#1593](https://github.com/nf-core/tools/pull/1593))
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2 changes: 1 addition & 1 deletion nf_core/pipeline-template/.github/workflows/linting.yml
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Expand Up @@ -76,7 +76,7 @@ jobs:

- uses: actions/setup-python@v3
with:
python-version: "3.6"
python-version: "3.7"
architecture: "x64"

- name: Install dependencies
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -7,7 +7,7 @@ requires = [

[tool.black]
line-length = 120
target_version = ["py36","py37","py38"]
target_version = ["py37", "py38", "py39", "py310"]

[tool.pytest.ini_options]
markers = [
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