Download: Improve container detection in configs, specifically the container parameter in process scope#2346

Merged

mirpedrol merged 6 commits intonf-core:devfrom MatthiasZepper:ContainerErrorDifferentialAbundance

Jun 30, 2023

+281-87

Commits on Jun 29, 2023

Split into two functions. This allows to use the DSL2 regexes also for cleaning any container declarations from the config file.
MatthiasZepper
committed
WIP commit, refactoring regexes again, because well...there are also hits with escape sequences.
MatthiasZepper
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Almost finished refactoring the container detection. Need to test edge cases though.
MatthiasZepper
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Hopefully, refactoring of container detection is finished now. Deduplication needs improvements still.
MatthiasZepper
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Added a test, but realized that Sarek has yet another edge-case. Clear improvement over previous performance, but still...
MatthiasZepper
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Add mock config for container detection.
MatthiasZepper
committed