Template config: conda.channels, not channels

CHANGELOG.md

@@ -14,6 +14,7 @@
 - Remove `pyproject.toml` from template root
 - Shorten lines in pipeline template ([#2908](https://github.com/nf-core/tools/pull/2908))
 - Permanently activated pipeline-specific institutional configs support for all pipelines without need for manual intervention ([#2936](https://github.com/nf-core/tools/pull/2936))
+- Template config: `conda.channels`, not `channels` ([#2950](https://github.com/nf-core/tools/pull/2950))
 - Handles multiple DOIs + doi.org resolver from manifest.doi ([#2946](https://github.com/nf-core/tools/pull/2946))
 - Update included components ([#2949](https://github.com/nf-core/tools/pull/2949))
 

nf_core/pipeline-template/nextflow.config

@@ -97,7 +97,7 @@ profiles {
         podman.enabled          = false
         shifter.enabled         = false
         charliecloud.enabled    = false
-        channels                = ['conda-forge', 'bioconda', 'defaults']
+        conda.channels          = ['conda-forge', 'bioconda', 'defaults']
         apptainer.enabled       = false
     }
     mamba {