Retrieving module information of input and output and EDAM ontology from bio.tools

[mirpedrol]

Working on nf-core/modules#5831

TO DO:

• Use the new functionality to update the meta.yml when linting. Update update_meta_yml_file() function at nf_core/modules/lint/__init__.py
• Fix mypy errors
• Fix new lines and trailing spaces in meta.yml
• Use the new information to generate the main.nf with it
• Possibly also use it for main.nf.test
• Add tests

[codecov]

Codecov Report

Attention: Patch coverage is 57.14286% with 21 lines in your changes missing coverage. Please review.

Project coverage is 76.39%. Comparing base (0716d91) to head (135f5da).
Report is 61 commits behind head on dev.

Files with missing lines	Patch %	Lines
nf_core/components/components_utils.py	47.36%	20 Missing ⚠️
nf_core/modules/lint/__init__.py	50.00%	1 Missing ⚠️

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[mashehu]

not sure if it isn't better to always return None if we don't get a correct entry, like we do in the function above