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Fix ch_blast_db to have correct cardinality for blast/blastn #452

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merged 2 commits into from
Dec 16, 2024
Merged

Fix ch_blast_db to have correct cardinality for blast/blastn #452

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d73ebf1
modifying ch_blast_db for correct cardinality
Joon-Klaps Dec 16, 2024
1c8e9f0
update changelog
Joon-Klaps Dec 16, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -31,6 +31,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [[PR #435](https://github.com/nf-core/viralrecon/pull/435)] - Changed to a patched cutadapt from nf-core modules, added `skip_noninternal_primers` param to allow users to process primers inside the pipeline, and added `threeprime_adapters` to determine whether primers are 3' or 5' adapters.
- [[PR #446](https://github.com/nf-core/viralrecon/pull/446)] - Update nextclade & pangolin modules
- [[PR #450](https://github.com/nf-core/viralrecon/pull/450)] - Patch nf schema - include integer & string as type for sample
- [[PR #452](https://github.com/nf-core/viralrecon/pull/452)] - Fix `ch_blast_db` to have correct cardinality for blast/blastn

### Parameters

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6 changes: 4 additions & 2 deletions subworkflows/local/prepare_genome_illumina.nf
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Expand Up @@ -209,10 +209,12 @@ workflow PREPARE_GENOME {
UNTAR_BLAST_DB (
[ [:], params.blast_db ]
)
ch_blast_db = UNTAR_BLAST_DB.out.untar.map { it[1] }
ch_blast_db = UNTAR_BLAST_DB.out.untar
ch_versions = ch_versions.mix(UNTAR_BLAST_DB.out.versions)
} else {
ch_blast_db = Channel.value(file(params.blast_db))
ch_blast_db = Channel.value(
[[id:'custom_blastdb'], file(params.blast_db)]
)
}
} else {
BLAST_MAKEBLASTDB (
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