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Update dev with main #6

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merged 2 commits into from
Jun 24, 2024
Merged

Update dev with main #6

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d87dad0
CompatHelper: bump compat for SingleCellProjections in [weakdeps] to …
github-actions[bot] Jun 24, 2024
e45efb1
CI badge and SingleCellProjections fix (#5)
niklasmueboe Jun 24, 2024
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62 changes: 31 additions & 31 deletions Project.toml
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Original file line number Diff line number Diff line change
@@ -1,45 +1,45 @@
name = "Sainsc"
uuid = "4c4340ea-7f9e-46b4-8512-61f1f6c41a11"
name = "Sainsc"
uuid = "4c4340ea-7f9e-46b4-8512-61f1f6c41a11"
authors = ["Niklas Müller-Bötticher <[email protected]>"]
version = "0.1.0"

[deps]
BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
ImageFiltering = "6a3955dd-da59-5b1f-98d4-e7296123deb5"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
PooledArrays = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
Unzip = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
ImageFiltering = "6a3955dd-da59-5b1f-98d4-e7296123deb5"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
PooledArrays = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
Unzip = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"

[weakdeps]
AutomaticSingleCellToolbox = "e6202555-39b2-4a04-a024-3007b9347e88"
CellScopes = "708d50d9-0a30-4b01-8594-5d83c0e43023"
Muon = "446846d7-b4ce-489d-bf74-72da18fe3629"
SingleCellProjections = "03d38035-ed2f-4a36-82eb-797f1727ab2e"
CellScopes = "708d50d9-0a30-4b01-8594-5d83c0e43023"
Muon = "446846d7-b4ce-489d-bf74-72da18fe3629"
SingleCellProjections = "03d38035-ed2f-4a36-82eb-797f1727ab2e"

[extensions]
AnnDataExt = "Muon"
AnnDataExt = "Muon"
AutomaticSingleCellToolboxExt = "AutomaticSingleCellToolbox"
CellScopesExt = "CellScopes"
SingleCellProjectionsExt = "SingleCellProjections"
CellScopesExt = "CellScopes"
SingleCellProjectionsExt = "SingleCellProjections"

[compat]
AutomaticSingleCellToolbox = "0.9"
BlockArrays = "0.16,1"
CSV = "0.10"
CategoricalArrays = "0.9,0.10"
CellScopes = "1"
DataFrames = "1"
ImageFiltering = "0.7"
LinearAlgebra = "1"
Muon = "0.2"
OffsetArrays = "1.11"
PooledArrays = "1"
SparseArrays = "1"
SingleCellProjections = "0.3"
Unzip = "0.2"
julia = "1.9"
BlockArrays = "0.16, 1"
CSV = "0.10"
CategoricalArrays = "0.9, 0.10"
CellScopes = "1"
DataFrames = "1"
ImageFiltering = "0.7"
LinearAlgebra = "1"
Muon = "0.2"
OffsetArrays = "1.11"
PooledArrays = "1"
SingleCellProjections = "0.3, 0.4"
SparseArrays = "1"
Unzip = "0.2"
julia = "1.9"
1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -4,6 +4,7 @@
[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://niklasmueboe.github.io/Sainsc.jl/dev)
[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
[![CI](https://github.com/niklasmueboe/Sainsc.jl/workflows/CI/badge.svg)](https://github.com/niklasmueboe/Sainsc.jl/actions?query=workflows/CI)

/ˈsaiəns/

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4 changes: 2 additions & 2 deletions ext/SingleCellProjectionsExt.jl
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Expand Up @@ -5,11 +5,11 @@ using SingleCellProjections: DataMatrix
using Sainsc

function Sainsc.getlocalmaxima(::Type{DataMatrix}, counts, localmax, kernel; genes=nothing)
return DataMatrix(getlocalmaxima(counts, localmax, kernel; genes=genes))
return DataMatrix(getlocalmaxima(counts, localmax, kernel; genes=genes)...)
end

function Sainsc.readstereoseqbinned(::Type{DataMatrix}, file, binsize::Integer)
return DataMatrix(readstereoseqbinned(file, binsize))
return DataMatrix(readstereoseqbinned(file, binsize)...)
end

end # module SingleCellProjectionsExt
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