some mods and launch.sh to help with performance testing

Morphology_1/launch.sh

@@ -0,0 +1,27 @@
+#!/bin/bash
+set -ex
+
+# 8.2 build
+# 8.2 buildclang
+# temp build
+# temp buildclang
+
+source $HOME/neuron/prefixenv $1/$2/install
+mkdir -p $1-$2
+cd $1-$2
+#nrnivmodl -incflags "-I/home/hines/soft/Caliper/build/install/include" ../mod_files
+nrnivmodl ../mod_files
+
+export PYTHONPATH=`pwd`/..:$PYTHONPATH
+#CALI_CONFIG=runtime-report,calc.inclusive nrniv -c 'mycpu=1' -c 'chdir("..")' protocols/01_SS.py
+
+#perf record nrniv -c 'mycpu=8' -c 'chdir("..")' protocols/01_SS.py
+#nrniv -c 'mycpu=4' -c 'chdir("..")' protocols/01_SS.py
+perf stat nrniv -c 'mycpu=8' -c 'chdir("..")' protocols/01_SS.py
+
+if false ; then
+$ cmake .. -G Ninja -DCMAKE_INSTALL_PREFIX=install \
+  -DPYTHON_EXECUTABLE=`pyenv which python` -DNRN_ENABLE_RX3D=OFF \
+  -DNRN_ENABLE_PROFILING=ON -DNRN_PROFILER=caliper \
+  -DCMAKE_PREFIX_PATH=$HOME/soft/Caliper/build/install/share/cmake/caliper
+fi

Morphology_1/protocols/01_SS.py

@@ -21,9 +21,10 @@
 cpu = multiprocessing.cpu_count()
 h.load_file("parcom.hoc")
 p = h.ParallelComputeTool()
-p.change_nthread(cpu,1)
-p.multisplit(1)
-print(cpu)
+if h.mycpu > 1.0:
+    p.change_nthread(h.mycpu,1)
+    p.multisplit(1)
+print(h.mycpu)
 
 #Voltage graph
 h('load_file("vm.ses")')
@@ -37,13 +38,23 @@
 h.tstop = 1000
 h.v_init = -65
 
+pc = h.ParallelContext()
+pc.set_gid2node(0, 0)
+pc.cell(0, cell.nc_spike)
+pc.set_maxstep(10)
+#from neuron import coreneuron
+#coreneuron.enable = 0
+#coreneuron.file_mode = 0
 #Initialization 
 def initialize():
     h.finitialize()
     h.run()
+#    h.stdinit()
+#    pc.psolve(h.tstop)
 
 initialize()
 
+'''
 #Save the results into an image
 fig, ax = plt.subplots()
 ax.plot(np.array(cell.time_vector), np.array(cell.vm), 'b', label='spikes')
@@ -59,4 +70,4 @@ def initialize():
 
 plt.savefig('01_SS_trace.eps')
 plt.close()
-
+'''