feat: upgrade repository to python3.13

also update precommit hooks

.github/workflows/quality.yml

@@ -22,4 +22,4 @@ jobs:
     uses: oedokumaci/oedokumaci/.github/workflows/quality.yml@main
     with:
       os_version: "ubuntu-latest"
-      python_version: "3.10"
+      python_version: "3.13"

.github/workflows/tests.yml

@@ -22,12 +22,11 @@ jobs:
     strategy:
       matrix:
         os_version:
-        - macos-latest
-        - windows-latest
-        - ubuntu-latest
+          - ubuntu-latest
+          - macos-latest
+          - windows-latest
         python_version:
-        - "3.10"
-        - "3.11"
+          - "3.13"
     uses: oedokumaci/oedokumaci/.github/workflows/tests.yml@main
     with:
       os_version: ${{ matrix.os_version }}

.pre-commit-config.yaml

@@ -1,17 +1,20 @@
 repos:
   - repo: https://github.com/psf/black
-    rev: 23.11.0
+    rev: 24.10.0
     hooks:
       - id: black
 
   - repo: https://github.com/PyCQA/flake8
-    rev: 7.0.0
+    rev: 7.1.1
     hooks:
       - id: flake8
         args:
           - --max-line-length=88
           - --select=C,E,F,W,B
-          - --extend-ignore=E203,E501,W503 # no select B950 for now and added W503 since it is incompatible with PEP8, rest is to be compatible with black, see https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html#line-length
+          - --extend-ignore=E203,E501,W503
+          # no select B950 for now and added W503 since it is incompatible with PEP8
+          # rest is to be compatible with black, see:
+          # https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html#line-length
         additional_dependencies:
           - flake8-bugbear
 
@@ -24,7 +27,7 @@ repos:
           - --profile=black # to be compatible with black
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v5.0.0
     hooks:
       - id: end-of-file-fixer
       - id: check-yaml
@@ -33,19 +36,19 @@ repos:
       - id: requirements-txt-fixer
 
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.6
+    rev: v2.3.0
     hooks:
       - id: codespell
         exclude: ^config/
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.15.0
+    rev: v3.19.1
     hooks:
       - id: pyupgrade
-        args: [--py310-plus]
-  
+        args: [--py313-plus]
+
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.8.0
+    rev: v1.14.1
     hooks:
       - id: mypy
         args:
@@ -60,17 +63,35 @@ repos:
           - types-PyYAML
 
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.7.1
+    rev: 1.9.1
     hooks:
       - id: nbqa-black
         # additional_dependencies: [jupytext]  # optional, only if you're using Jupytext
       - id: nbqa-pyupgrade
-        args: [--py310-plus]
+        args: [--py313-plus]
       - id: nbqa-isort
         args: [--float-to-top, --profile=black]
+      - id: nbqa-flake8
+        args:
+          - --max-line-length=88
+          - --select=C,E,F,W,B
+          - --extend-ignore=E203,E501,W503
+        additional_dependencies:
+          - flake8-bugbear
+      - id: nbqa-mypy
+        types_or: [jupyter]
+        args:
+          - --ignore-missing-imports
+        additional_dependencies:
+          - mypy
+          - pydantic
+          - pytest
+          - rich
+          - typer
+          - types-PyYAML
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.6.1
+    rev: 0.8.1
     hooks:
       - id: nbstripout
 

Dockerfile

@@ -1,5 +1,5 @@
 # Use an official Python runtime as a parent image
-FROM python:3.10
+FROM python:3.13
 
 # Set the working directory in the container
 WORKDIR /usr/src/app

Makefile

@@ -33,8 +33,8 @@ ifeq ($(OS),Windows_NT)
 else
 	@echo '{' > .vscode/settings.json
 	@echo '    "flake8.args": ["--max-line-length=88", "--select=C,E,F,W,B", "--extend-ignore=B009,E203,E501,W503"],' >> .vscode/settings.json
-	@echo '    "python.autoComplete.extraPaths": [".venv/lib/python3.10/site-packages"],' >> .vscode/settings.json
-	@echo '    "python.analysis.extraPaths": [".venv/lib/python3.10/site-packages"],' >> .vscode/settings.json
+	@echo '    "python.autoComplete.extraPaths": [".venv/lib/python3.13/site-packages"],' >> .vscode/settings.json
+	@echo '    "python.analysis.extraPaths": [".venv/lib/python3.13/site-packages"],' >> .vscode/settings.json
 	@echo '    "python.testing.pytestPath": ".venv/bin/pytest"' >> .vscode/settings.json
 	@echo '}' >> .vscode/settings.json
 endif

README.md

@@ -14,7 +14,7 @@ This is a template Python repository to start a fresh project with a default set
 
 The project setup includes:
 
-- Python >= 3.10
+- Python >= 3.13
 - Ubuntu, MacOS, Windows latest OS versions
 - [PDM](https://pdm.fming.dev/latest/) for dependency management
 - [GitHub Actions](https://github.com/features/actions) and [pre-commit](https://pre-commit.com/) for linting, formatting, CI/CD
@@ -26,9 +26,9 @@ The project setup includes:
 
 # Getting Started
 
-1. Install [Python](https://www.python.org/downloads/) 3.10 in your local machine. For MacOS use
+1. Install [Python](https://www.python.org/downloads/) 3.13 in your local machine. For MacOS use
 ```zsh
-brew install python@3.10
+brew install python@3.13
 ```
 2. Click on the `Use this template` button [at this page](https://github.com/oedokumaci/template-python) to create a new repository from this template (you must be logged in to GitHub to see the button).
 3. Name your repository and click `Create repository from template`. If the repository name is more than one word, make sure to use -hyphens- instead of spaces or underscores.
@@ -49,7 +49,7 @@ python3 template_setup.py [--user-name YOUR_GIT_USER_NAME] [--user-email YOUR_GI
  - Remove `README.md` and rename `README_main.md` to `README.md`
  - If not installed pip install [PDM](https://pdm.fming.dev/latest/) in your local machine
  - Update PDM to the latest version
- - [PDM](https://pdm.fming.dev/latest/) init with Python 3.10
+ - [PDM](https://pdm.fming.dev/latest/) init with Python 3.13
  - Install dependencies with [PDM](https://pdm.fming.dev/latest/)
  - Install [pre-commit](https://pre-commit.com/) hooks to local `.git` folder
  <!-- - Prompt user an option include `.vscode/settings.json` -->

README_main.md

@@ -45,7 +45,7 @@ template-python
 
 ## Requirements
 
-- Python >= 3.10
+- Python >= 3.13
 - OS: Ubuntu, MacOS, Windows
 
 ## Installation