Add feature MDE - metadata editor for OMERO.importer

[sukunis]

beta-version

[pwalczysko]

@sukunis Hello, this is great and thank you

I was wondering if you could point me to a wokflow with concrete fields filled in and a pointer as to where the intput will be located. I found https://www.ibios.uni-osnabrueck.de/index.php?cat=Service&file=OMEROImporter_v5.2_HandsOn.pdf but in the step where the metadata are added are not detailed enough. Thank you

Edit: I am only able to ever see something like in the screenshot below - whatever I try to add as metadata (defining a new model and applying it)

Edit2: I also have in the log of insight following lines:

-- load MDE configuration
-- init NEW MDEConfiguration
ERROR: can't find configuration file for MDE
-- init DEFAULT content [ModuleController]

So maybe I need a configuration file for MDE ? How to get one please ?

[sukunis]

@pwalczysko
I have add more detailed description to the Readme of my branch. An example configuration file is stored in the repository. You have to put it under /omero/ . If no configuration file is available, default OME objects are loaded. If you add some annotations in the MDE, after import they should be available under key-value-pairs.

[sukunis]

sorry: the path is /<user >/omero ( where the logfiles directory is located)

[pwalczysko]

Thank you @sukunis

So I have the .xml file now and understood how to create Key-Value pairs using your app.

I also thought that I can apply the settings on a whole folder in one go. Is that true ? At the moment, I am getting no Key-Value pairs if I select a whole subfolder in local hierarchy in your app and apply the new settings to it (see screenshot below, I do have success though if I select just one single image, see screenshot above)

Is there a possibility to add the metadata to several images in one click ?

[snoopycrimecop]

Conflicting PR. Removed from build OMERO-insight-push#85. See the console output for more details.
Possible conflicts:

• Upstream changes
  • src/main/java/org/openmicroscopy/shoola/env/LookupNames.java

--conflicts

[snoopycrimecop]

Conflicting PR. Removed from build OMERO-insight-push#97. See the console output for more details.
Possible conflicts:

• Upstream changes
  • src/main/java/org/openmicroscopy/shoola/env/LookupNames.java

--conflicts Conflict resolved in build OMERO-insight-push#99. See the console output for more details.

[jburel]

@sukunis I have replaced the MonitorAndDebug class by ConsoleLoggerImpl class. This can also be configured in container.xml or containerImporter.xml by setting <entry name="/services/LOG/output/console" type="boolean">false</entry> to true

[jburel]

Thanks @sukunis. Merging so it is included in the coming 5.6 version
so you won't have to maintain a separate branch