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#310. Fix. Column names in snake case
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@const8ine
const8ine committed Sep 6, 2024
1 parent c66e8ac commit 49fe9e1
Showing 1 changed file with 92 additions and 92 deletions.
184 changes: 92 additions & 92 deletions src/app/core/services/csv-export-service.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -83,17 +83,17 @@ export class CsvExportService extends AdditionalInterventionResolver {
}

public async generateGenesDiseasesTable() {
return await this.generateSimplePairCsv(["HGNC", "diseases"], 'diseases');
return await this.generateSimplePairCsv(["hgnc", "diseases"], 'diseases');
}

public async generateGenesConfidenceLevelTable() {
return await this.generateSimplePairCsv(["HGNC", "confidence level"], 'confidenceLevel', (g) => {
return await this.generateSimplePairCsv(["hgnc", "confidence_level"], 'confidenceLevel', (g) => {
return g.confidenceLevel.name;
});
}

public async generateGenesAgingMechanismsTable() {
return await this.generateSimplePairCsv(["HGNC", "hallmarks of aging"], 'agingMechanisms', (g) => {
return await this.generateSimplePairCsv(["hgnc", "hallmarks_of_aging"], 'agingMechanisms', (g) => {
// Filter duplicates from backend
const mappedMechanisms = new Map();
g.agingMechanisms.forEach((e) => {
Expand All @@ -109,7 +109,7 @@ export class CsvExportService extends AdditionalInterventionResolver {
const fetchedItems = await CsvExportService.FetchData(`${this.apiUrl}/api/gene/symbols`, 0, 1, {});
const resItems = await fetchedItems.json();
items = resItems.map((gene) => gene.symbol);
const csvHeader = this.makeRow(['HGNC', 'tissue or organ', 'rpkm']);
const csvHeader = this.makeRow(['hgnc', 'tissue_or_organ', 'rpkm']);
resultingString = resultingString + csvHeader;

if (items.length !== 0) {
Expand Down Expand Up @@ -140,7 +140,7 @@ export class CsvExportService extends AdditionalInterventionResolver {
const fetchedItems = await CsvExportService.FetchData(`${this.apiUrl}/api/gene/symbols`, 0, 1, {});
const resItems = await fetchedItems.json();
items = resItems.map((gene) => gene.symbol);
const csvHeader = this.makeRow(['HGNC', 'GO biological process', 'GO molecular activity', 'GO cellular component']);
const csvHeader = this.makeRow(['hgnc', 'go_biological_process', 'go_molecular_activity', 'go_cellular_component']);
resultingString = resultingString + csvHeader;

if (items.length !== 0) {
Expand Down Expand Up @@ -180,31 +180,31 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generatePinkTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'polymorphism type',
'polymorphism id',
'nucleotide substitution',
'amino acid substitution',
'polymorphism — other',
'hgnc',
'polymorphism_type',
'polymorphism_id',
'nucleotide_substitution',
'amino_acid_substitution',
'polymorphism_other',
'effect',
'association type',
'association_type',
'significance',
'p value',
'change type',
'control cohort size',
'experiment cohort size',
'control lifespan - min',
'control lifespan - mean',
'control lifespan - max',
'experiment lifespan - min',
'experiment lifespan - mean',
'experiment lifespan - max',
'p_value',
'change_type',
'control_cohort_size',
'experiment_cohort_size',
'control_lifespan_min',
'control_lifespan_mean',
'control_lifespan_max',
'experiment_lifespan_min',
'experiment_lifespan_mean',
'experiment_lifespan_max',
'ethnicity',
'associated allele',
'non-associated allele',
'allelic frequency in controls',
'allelic frequency in experiment',
'study type',
'associated_allele',
'non-associated_allele',
'allelic_frequency_controls',
'allelic_frequency_experiment',
'study_type',
'sex',
'doi',
'pmid',
Expand Down Expand Up @@ -298,13 +298,13 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generateYellowTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'hgnc',
'comment',
'doi',
'pmid',
'protein activity',
'regulated gene',
'regulation type',
'protein_activity',
'regulated_gene',
'regulation_type',
]);
resultingString = resultingString + csvHeader;

Expand Down Expand Up @@ -342,47 +342,47 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generatePurpleTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'model organism',
'hgnc',
'model_organism',
'sex',
'line',
'effect on lifespan',
'control cohort size',
'experiment cohort size',
'quantity of animals in a cage or container',
'containment t (Celsius) - from',
'containment t (Celsius) - to',
'effect_on_lifespan',
'control_cohort_size',
'experiment_cohort_size',
'quantity_of_animals_in_cage_or_container',
'containment_t_celsius_from',
'containment_t_celsius_to',
'diet',
'target gene expression change',
'control lifespan - min',
'control lifespan - mean',
'control lifespan - median',
'control lifespan - max',
'experiment lifespan - min',
'experiment lifespan - mean',
'experiment lifespan - median',
'experiment lifespan - max',
'lifespan time unit',
'lifespan % change - min',
'significance - min',
'lifespan % change - mean',
'significance - mean',
'lifespan % change - median',
'significance - median',
'lifespan % change - max',
'significance - max',
'intervention deteriorates',
'intervention improves',
'main effect on lifespan',
'intervention way',
'intervention method',
'target_gene_expression_change',
'control_lifespan_min',
'control_lifespan_mean',
'control_lifespan_median',
'control_lifespan_max',
'experiment_lifespan_min',
'experiment_lifespan_mean',
'experiment_lifespan_median',
'experiment_lifespan_max',
'lifespan_time_unit',
'lifespan_%_change_min',
'significance_min',
'lifespan_%_change_mean',
'significance_mean',
'lifespan_%_change_median',
'significance_median',
'lifespan_%_change_max',
'significance_max',
'intervention_deteriorates',
'intervention_improves',
'main_effect_on_lifespan',
'intervention_way',
'intervention_method',
'genotype',
'tissue',
'promoter/driver',
'induction by drug withdrawal',
'promoter_or_driver',
'induction_by_drug_withdrawal',
'drug',
'treatment start',
'treatment end',
'treatment_start',
'treatment_end',
'doi',
'pmid',
]);
Expand Down Expand Up @@ -565,16 +565,16 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generateGreenTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'hgnc',
'comment',
'doi',
'pmid',
'intervention',
'model organism',
'model_organism',
'line',
'intervention deteriorates',
'intervention improves',
'intervention result',
'intervention_deteriorates',
'intervention_improves',
'intervention_result',
'process',
'age',
'genotype',
Expand Down Expand Up @@ -654,26 +654,26 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generateBlueTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'model organism',
'hgnc',
'model_organism',
'line',
'sex',
'change percentage',
'p value',
'change_percentage',
'p_value',
'sample',
'age of control - min',
'age of control - mean',
'age of control - max',
'age of experiment - min',
'age of experiment - mean',
'age of experiment - max',
'age unit',
'change type',
'control cohort size',
'experiment cohort size',
'statistical method',
'expression evaluation by',
'measurement method',
'age_of_control_min',
'age_of_control_mean',
'age_of_control_max',
'age_of_experiment_min',
'age_of_experiment_mean',
'age_of_experiment_max',
'age_unit',
'change_type',
'control_cohort_size',
'experiment_cohort_size',
'statistical_method',
'expression_evaluation_by',
'measurement_method',
'comment',
'doi',
'pmid',
Expand Down Expand Up @@ -753,7 +753,7 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generateGeneCriteriaTable() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'hgnc',
'criteria',
]);
resultingString = resultingString + csvHeader;
Expand Down Expand Up @@ -785,10 +785,10 @@ export class CsvExportService extends AdditionalInterventionResolver {
public async generateSummarizedResearchResults() {
let resultingString = '';
const csvHeader = this.makeRow([
'HGNC',
'hgnc',
'research',
'criteria',
'model organism',
'model_organism',
'sex',
'line',
'tissue',
Expand Down Expand Up @@ -955,7 +955,7 @@ export class CsvExportService extends AdditionalInterventionResolver {
);
const resItems = await fetchedItems.json();
items = resItems.items;
const csvHeader = this.makeRow(['HGNC', 'gene origin', 'gene family origin', 'conservative in']);
const csvHeader = this.makeRow(['hgnc', 'gene_origin', 'gene_family_origin', 'conservative_in']);
resultingString = resultingString + csvHeader;

if (items.length !== 0) {
Expand Down

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