Parse2 tests for R1&2 and R2 reads (read25-read27). read25/26 is a pa…

…ir testing correctness of flip.
open2c · Jan 20, 2025 · 27d20c3 · 27d20c3
1 parent 89e9e94
commit 27d20c3
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/tests/data/mock.parse2.sam b/tests/data/mock.parse2.sam
@@ -56,3 +56,14 @@ readid22	129	chr1	200	0	50M	chr1	10	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
 readid23	129	chr1	200	0	50M	chr1	10	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	NM:i:0	CT:Z:SIMULATED:!,0,!,0,-,-,XX,1,R1-2
 readid24	65	chr1	10	60	25M25S	chr1	200	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,5300,-,25M25H,60,0;	CT:Z:SIMULATED:chr1,34,chr1,5324,+,+,UU,1,R1|!,0,chr1,5300,-,-,NU,2,R1-2
 readid24	2129	chr1	5300	60	25M25H	chr1	200	0	AAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	CT:Z:SIMULATED:chr1,34,chr1,5324,+,+,UU,1,R1|!,0,chr1,5300,-,-,NU,2,R1-2
+readid25	97	chr1	1	60	36S45M	=	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,200,+,38M43S,60,0;	CT:Z:SIMULATED:chr1,1,chr1,237,-,+,UU,1,R1&2
+readid25	2145	chr1	200	60	38M43H	chr1	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,1,+,36S45M,60,0;	CT:Z:SIMULATED:chr1,1,chr1,237,-,+,UU,1,R1&2
+readid25	145	chr1	1	60	168S53M	=	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,200,-,132S38M51S,60,0;	CT:Z:SIMULATED:chr1,1,chr1,237,-,+,UU,1,R1&2
+readid25	2193	chr1	200	60	132H38M51H	chr1	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,1,-,168S53M,60,0;	CT:Z:SIMULATED:chr1,1,chr1,237,-,+,UU,1,R1&2
+readid26	97	chr1	200	60	36S45M	=	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,1,+,38M43S,60,0;	CT:Z:SIMULATED:chr1,38,chr1,200,+,-,UU,1,R1&2
+readid26	2145	chr1	1	60	38M43H	chr1	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,200,+,36S45M,60,0;	CT:Z:SIMULATED:chr1,38,chr1,200,+,-,UU,1,R1&2
+readid26	145	chr1	200	60	168S53M	=	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,1,-,132S38M51S,60,0;	CT:Z:SIMULATED:chr1,38,chr1,200,+,-,UU,1,R1&2
+readid26	2193	chr1	1	60	132H38M51H	chr1	1	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,200,-,168S53M,60,0;	CT:Z:SIMULATED:chr1,38,chr1,200,1,+,-,UU,1,R1&2
+readid27	97	chr1	128	60	81M	=	200	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	CT:Z:SIMULATED:chr1,1,chr1,369,-,+,UU,1,R2	
+readid27	145	chr1	200	60	170M51S	=	128	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,1,-,168S53M,60,0;	CT:Z:SIMULATED:chr1,1,chr1,369,-,+,UU,1,R2
+readid27	2193	chr1	1	60	168H53M	chr1	128	0	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	NM:i:0	SA:Z:chr1,200,-,170M51S,60,0;	CT:Z:SIMULATED:chr1,1,chr1,369,-,+,UU,1,R2