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CMake Tar: TOML11 3.7.1 #1673

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merged 1 commit into from
Oct 1, 2024
Merged

CMake Tar: TOML11 3.7.1 #1673

merged 1 commit into from
Oct 1, 2024

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ax3l
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@ax3l ax3l commented Oct 1, 2024

Keep branch and tar to TOML11 v3.7.1 in sync.
We currently still see issues with, so let's not ship it by default in superbuilds.

From @franzpoeschel:

About to parse 'iteration_encoding = "variable_based"'
[fwk394:211086:0:211086] Caught signal 11 (Segmentation fault: Sent by the kernel at address (nil))

Follow-up to #1668 #1645

Keep branch and tar to TOML11 v3.7.1 in sync.
We currently still see issues with, so let's not ship it by default
in superbuilds.
@ax3l ax3l added bug third party third party libraries that are shipped and/or linked backend: TOML labels Oct 1, 2024
@ax3l ax3l added this to the 0.16.0 milestone Oct 1, 2024
@ax3l ax3l requested a review from franzpoeschel October 1, 2024 23:21
@@ -64,10 +64,10 @@ set(openPMD_toml11_src ""
"Local path to toml11 source directory (preferred if set)")

# tarball fetcher
set(openPMD_toml11_tar "https://github.com/ToruNiina/toml11/archive/refs/tags/v4.2.0.tar.gz"
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This was out-of-sync, we use 3.7.1 also in openPMD_toml11_branch and documentation.

@ax3l ax3l requested a review from DerNils-git October 1, 2024 23:27
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ax3l commented Oct 1, 2024

@franzpoeschel @DerNils-git please open a ticket in https://github.com/ToruNiina/toml11 with a reproducer for this issue.

@ax3l ax3l enabled auto-merge (squash) October 1, 2024 23:29
@ax3l ax3l disabled auto-merge October 1, 2024 23:44
@ax3l ax3l merged commit aea4b72 into openPMD:dev Oct 1, 2024
29 of 31 checks passed
@ax3l ax3l deleted the cmake-toml11-3.7.1 branch October 1, 2024 23:44
franzpoeschel added a commit to franzpoeschel/openPMD-api that referenced this pull request Oct 9, 2024
franzpoeschel added a commit that referenced this pull request Oct 9, 2024
franzpoeschel added a commit to ax3l/openPMD-api that referenced this pull request Dec 20, 2024
ax3l added a commit that referenced this pull request Jan 16, 2025
* Release: 0.16.1

Signed-off-by: Axel Huebl <[email protected]>

* Fix new_version.py

* Update version in windows.yml

* Reformat with yapf3

* Fix greedy Regex parsing

* Changelog: Add PRs #1681 #1679 #1678

* Fix: CMake Internal Control (#1678)

The `openPMD_USE_INTERNAL_*` options are for general internal/external
control. They were accidentally overwritten by new tar flags
and sometimes incomplete.

Signed-off-by: Axel Huebl <[email protected]>

* Revert "CMake Tar: TOML11 3.7.1 (#1673)" (#1679)

This reverts commit aea4b72.

* Replace deprecated makeSuite with loadTestsFromTestCase (#1681)

Removed with Python 3.13

* Doc: Fix Shipped Internally (#1682)

Downloaded now.

Signed-off-by: Axel Huebl <[email protected]>

* `PYBIND11_FINDPYTHON=ON` (#1684)

Reuse our `find_package(Python ...)` call and use new CMake logic in
pybind11.
https://pybind11.readthedocs.io/en/stable/compiling.html#modules-with-cmake
https://cmake.org/cmake/help/latest/command/find_package.html#config-mode-version-selection

Signed-off-by: Axel Huebl <[email protected]>

* Fix ICX build (#1690)

Error was:
 /home/runner/work/openPMD-api/openPMD-api/include/openPMD/backend/Container.hpp:262:32:
error: no member named 'm_container' in 'Container<T, T_key,
T_container>'
  262 |         container().swap(other.m_container);

* Fix Leftover ADIOS1 Mentions (#1683)

* Fix Leftover ADIOS1 Mentions

Signed-off-by: Axel Huebl <[email protected]>

* Remove ADIOS1 from examples

---------

Signed-off-by: Axel Huebl <[email protected]>
Co-authored-by: Franz Pöschel <[email protected]>

* Explicitly specify ADIOS2 components in openPMDConfig.cmake (#1693)

* Explicitly specify ADIOS2 components in openPMDConfig.cmake

When including openPMD in downstream CMake and that CMake script
contains Fortran, ADIOS2 will automatically detect that. But since we
do not reexport the ADIOS2 headers, we only need the components that
openPMD explicitly uses: CXX and MPI.

* Same in CMakeLists.txt

* Remove mpirun_workaround.sh (#1698)

Seems to no longer be necessary in the affected CI runs

* Properly check for empty HDF5_VERSION in CMake (#1702)

The old test apparently invoked some weird CMake legacy behavior.
This should make the pinned HDF5 Conda version unnecessary (#1701) since
the version with missing HDF5_VERSION is correctly dealt with.

* HDF5: Delete and re-create attribute when overwriting with diff. type (#1697)

* HDF5: Delete and re-create attribute when overwriting with diff. type

* WIP: Change datatype in test

Somehow truncation test is broken by this

* Add forgotten H5Aclose() call

* TOUCH IOTask: Avoid setting files as dirty in non-write modes (#1704)

* Bugfix: Consider dirty upon touch() only in write modes

* Add error check to avoid writing in read-only mode

* Changelog

* Use ULONG for particle patches

* Upgrade appleclang14 build to MacOS 13

> The macOS-12 environment is deprecated, consider switching to macOS-13,
macOS-14 (macos-latest) or macOS-15. For more details, see
actions/runner-images#10721

* Update Changelog

* Release Date

---------

Signed-off-by: Axel Huebl <[email protected]>
Co-authored-by: Franz Pöschel <[email protected]>
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